Wall clock time and date at job start Mon Mar 30 2020 03:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51057 * 2 1 4 4 C 1.53051 * 109.48936 * 239.94136 * 2 1 3 5 5 N 1.46951 * 109.38582 * 298.44764 * 4 2 1 6 6 C 1.46897 * 111.00266 * 176.79763 * 5 4 2 7 7 C 1.53004 * 117.49708 * 12.00114 * 6 5 4 8 8 C 1.53009 * 117.49735 * 303.34154 * 6 5 4 9 9 C 1.46954 * 110.87826 * 300.66721 * 5 4 2 10 10 H 1.08993 * 109.49093 * 299.34920 * 9 5 4 11 11 C 1.50707 * 109.48762 * 179.30611 * 9 5 4 12 12 H 1.08001 * 120.00188 * 0.02562 * 11 9 5 13 13 C 1.37879 * 119.99963 * 179.97438 * 11 9 5 14 14 N 1.31515 * 119.99967 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99760 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47443 * 89.99810 * 15 13 11 17 17 H 1.48500 * 109.47015 * 209.99748 * 15 13 11 18 18 H 1.48502 * 109.47411 * 329.99402 * 15 13 11 19 19 C 1.53055 * 109.36705 * 59.32014 * 9 5 4 20 20 N 1.46956 * 109.36199 * 301.60024 * 19 9 5 21 21 H 1.08992 * 109.47127 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46525 * 300.05537 * 1 2 3 23 23 H 1.08994 * 109.46936 * 60.05375 * 1 2 3 24 24 H 1.08996 * 109.48876 * 178.46583 * 4 2 1 25 25 H 1.09005 * 109.48764 * 58.42815 * 4 2 1 26 26 H 1.08996 * 115.55145 * 157.67466 * 6 5 4 27 27 H 1.08996 * 117.49537 * 0.02562 * 7 6 5 28 28 H 1.09002 * 117.49690 * 145.02072 * 7 6 5 29 29 H 1.08997 * 117.49707 * 214.97462 * 8 6 5 30 30 H 1.08995 * 117.49854 * 359.97438 * 8 6 5 31 31 H 0.96997 * 119.99905 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.48783 * 61.56607 * 19 9 5 33 33 H 1.08996 * 109.48597 * 181.60485 * 19 9 5 34 34 H 1.00900 * 110.99556 * 295.45261 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7227 -1.2488 5 7 1.5809 -2.1183 -1.2270 6 6 1.9877 -2.8258 -2.4484 7 6 3.0102 -2.1384 -3.3556 8 6 1.5449 -2.2342 -3.7882 9 6 2.0711 -2.8125 -0.0281 10 1 3.1611 -2.8126 -0.0281 11 6 1.5683 -4.2332 -0.0289 12 1 0.9470 -4.5857 -0.8389 13 6 1.9022 -5.0833 1.0040 14 7 2.6592 -4.6542 1.9902 15 14 1.2795 -6.8443 1.0027 16 1 2.2569 -7.7145 0.3008 17 1 1.1158 -7.3125 2.4024 18 1 -0.0294 -6.9061 0.3038 19 6 1.5605 -2.0904 1.2210 20 7 2.0203 -0.6947 1.1991 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5147 0.8896 23 1 -0.3633 0.5130 -0.8904 24 1 3.1302 -0.6989 -1.2627 25 1 1.6547 -0.2265 -2.1394 26 1 2.0351 -3.9118 -2.3689 27 1 3.3813 -1.1615 -3.0458 28 1 3.7301 -2.7724 -3.8732 29 1 1.3015 -2.9310 -4.5902 30 1 0.9514 -1.3203 -3.7632 31 1 2.8945 -5.2523 2.7166 32 1 0.4709 -2.1141 1.2349 33 1 1.9464 -2.5869 2.1113 34 1 3.0262 -0.6445 1.2601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966258.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:20 Heat of formation + Delta-G solvation = 20.232390 kcal Electronic energy + Delta-G solvation = -14898.200448 eV Core-core repulsion = 12638.076344 eV Total energy + Delta-G solvation = -2260.124105 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72447 -37.62399 -35.31979 -33.01759 -32.01466 -28.94801 -26.64436 -25.86128 -23.24882 -23.02802 -21.49918 -19.86644 -18.38120 -17.70742 -16.65674 -16.42925 -15.93462 -15.30348 -15.09987 -14.75002 -14.08153 -13.79471 -13.28593 -13.06559 -12.86151 -12.69374 -12.57255 -12.47110 -12.10401 -11.94315 -11.84921 -11.59106 -11.53778 -11.21427 -10.93161 -10.57356 -9.16430 -8.73926 -8.14568 -6.24202 1.40352 1.42482 1.52679 2.40343 2.92040 3.13522 3.30360 3.59217 3.98845 4.09220 4.16693 4.23301 4.35057 4.46490 4.62487 4.72943 4.75706 4.86959 4.96223 5.01179 5.04379 5.17568 5.23624 5.25937 5.37130 5.51785 5.67444 5.71926 6.06331 6.30293 6.41639 6.61631 6.70177 6.90318 7.43423 8.91523 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.013019 C = 0.010010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.027738 B = 2150.183392 C = 2796.560890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.082 3.918 3 H 0.099 0.901 4 C 0.023 3.977 5 N -0.500 5.500 6 C 0.011 3.989 7 C -0.220 4.220 8 C -0.157 4.157 9 C 0.200 3.800 10 H -0.043 1.043 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.959 3.041 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.270 1.270 19 C 0.080 3.920 20 N -0.690 5.690 21 H 0.043 0.957 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.017 0.983 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 6.827 -7.096 9.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.028 4.028 3 H 0.117 0.883 4 C -0.107 4.107 5 N -0.222 5.222 6 C -0.099 4.099 7 C -0.259 4.259 8 C -0.194 4.194 9 C 0.091 3.909 10 H -0.026 1.026 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.184 4.184 14 N -0.557 5.557 15 Si 0.785 3.215 16 H -0.204 1.204 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.050 4.050 20 N -0.318 5.318 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.035 0.965 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.354 7.017 -6.454 9.820 hybrid contribution 1.475 -1.610 -0.456 2.231 sum -0.879 5.407 -6.911 8.819 Atomic orbital electron populations 1.21628 0.93819 1.01636 1.01339 1.21785 0.96966 0.97212 0.86880 0.88282 1.22966 0.96497 0.90596 1.00635 1.62024 1.57699 1.01085 1.01439 1.22682 1.02154 0.97554 0.87514 1.23502 0.93316 1.03087 1.06012 1.23061 0.96106 1.03310 0.96967 1.19626 0.90556 0.93146 0.87558 1.02558 1.21316 1.31339 0.95926 1.07206 0.92574 1.25675 0.95167 1.02459 0.95079 1.69981 1.37589 1.36950 1.11167 0.85538 0.78765 0.79956 0.77273 1.20360 1.20789 1.19413 1.21939 0.98550 0.85436 0.99070 1.60945 1.15575 1.15848 1.39459 0.93816 0.92690 0.91132 0.96460 0.89572 0.88293 0.88660 0.88737 0.87500 0.88325 0.92807 0.93400 0.90700 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.84 71.98 0.64 -3.48 16 2 C 0.08 2.75 3.70 44.91 0.17 2.92 16 3 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.02 0.79 3.70 86.31 0.32 1.11 16 5 N -0.50 -21.17 4.06 -849.76 -3.45 -24.62 16 6 C 0.01 0.42 5.68 44.92 0.26 0.68 16 7 C -0.22 -6.97 9.57 30.62 0.29 -6.67 16 8 C -0.16 -4.67 9.96 30.63 0.30 -4.36 16 9 C 0.20 10.09 1.94 44.18 0.09 10.17 16 10 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16 11 C -0.52 -28.46 7.65 25.60 0.20 -28.27 16 12 H 0.06 3.10 6.85 -2.91 -0.02 3.08 16 13 C 0.02 0.85 5.30 84.66 0.45 1.29 16 14 N -0.92 -52.29 11.35 21.45 0.24 -52.04 16 15 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.08 3.88 5.38 86.31 0.46 4.35 16 20 N -0.69 -27.68 6.70 -491.04 -3.29 -30.97 16 21 H 0.04 1.70 5.94 -2.39 -0.01 1.69 16 22 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.02 0.63 6.98 -2.39 -0.02 0.61 16 25 H 0.09 2.62 6.63 -2.38 -0.02 2.60 16 26 H 0.10 4.41 6.46 -2.39 -0.02 4.39 16 27 H 0.10 2.91 5.93 -2.39 -0.01 2.90 16 28 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.10 2.74 7.29 -2.39 -0.02 2.73 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.51 16 32 H 0.05 2.42 6.34 -2.39 -0.02 2.40 16 33 H 0.07 4.11 6.13 -2.39 -0.01 4.10 16 34 H 0.33 13.01 8.89 -89.69 -0.80 12.21 16 Total: -1.00 -58.54 259.28 -1.00 -59.54 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.29 Total: 24.70 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.17 Total: -22.25 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -6.49 Total: -107.63 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.54 -1.00 -59.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966258.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.777 kcal (2) G-P(sol) polarization free energy of solvation -58.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds