Wall clock time and date at job start Mon Mar 30 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.48425 * 2 1 4 4 C 1.53047 * 109.49044 * 120.06549 * 2 1 3 5 5 N 1.46961 * 109.36279 * 178.36991 * 4 2 1 6 6 C 1.46899 * 110.99924 * 176.81074 * 5 4 2 7 7 C 1.53000 * 117.50080 * 303.80098 * 6 5 4 8 8 C 1.53002 * 60.02940 * 252.49785 * 7 6 5 9 9 C 1.46955 * 110.88018 * 300.68010 * 5 4 2 10 10 H 1.09006 * 109.48719 * 299.35254 * 9 5 4 11 11 C 1.50697 * 109.48985 * 179.29331 * 9 5 4 12 12 H 1.08000 * 119.99911 * 359.97438 * 11 9 5 13 13 C 1.37881 * 120.00197 * 180.02562 * 11 9 5 14 14 N 1.31514 * 119.99586 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00119 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47265 * 59.99793 * 15 13 11 17 17 H 1.48497 * 109.47455 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47385 * 299.99888 * 15 13 11 19 19 C 1.53047 * 109.36601 * 59.32181 * 9 5 4 20 20 N 1.46955 * 109.48833 * 239.95888 * 2 1 3 21 21 H 1.09000 * 109.46666 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46826 * 300.04124 * 1 2 3 23 23 H 1.08993 * 109.47087 * 60.04444 * 1 2 3 24 24 H 1.09001 * 109.49093 * 58.40352 * 4 2 1 25 25 H 1.09001 * 109.48893 * 298.33404 * 4 2 1 26 26 H 1.09008 * 115.56083 * 89.48790 * 6 5 4 27 27 H 1.09002 * 117.49833 * 359.97438 * 7 6 5 28 28 H 1.09002 * 117.49953 * 144.99931 * 7 6 5 29 29 H 1.09000 * 117.49996 * 107.50493 * 8 7 6 30 30 H 1.08999 * 117.49664 * 252.51862 * 8 7 6 31 31 H 0.97003 * 119.99579 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.49093 * 61.56480 * 19 9 5 33 33 H 1.09000 * 109.48996 * 181.61421 * 19 9 5 34 34 H 1.00900 * 111.00235 * 304.57536 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7228 1.2486 5 7 3.5098 -0.7554 1.2262 6 6 4.0413 -1.3755 2.4472 7 6 3.6234 -0.7678 3.7877 8 6 5.0490 -0.5682 3.2693 9 6 4.0000 -1.4489 0.0270 10 1 3.6361 -2.4764 0.0268 11 6 5.5070 -1.4490 0.0269 12 1 6.0470 -0.9804 0.8364 13 6 6.1964 -2.0463 -1.0070 14 7 5.5388 -2.6165 -1.9929 15 14 8.0644 -2.0458 -1.0073 16 1 8.5599 -2.7450 0.2055 17 1 8.5594 -2.7467 -2.2192 18 1 8.5590 -0.6456 -1.0081 19 6 3.4894 -0.7261 -1.2217 20 7 2.0203 -0.6935 -1.1993 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5145 0.8896 23 1 -0.3633 0.5131 -0.8903 24 1 1.6545 -1.7420 1.2624 25 1 1.7023 -0.1933 2.1393 26 1 4.1770 -2.4563 2.4051 27 1 2.9544 0.0925 3.7636 28 1 3.4839 -1.4487 4.6274 29 1 5.3176 0.4231 2.9042 30 1 5.8473 -1.1181 3.7677 31 1 6.0238 -3.0364 -2.7205 32 1 3.8756 0.2931 -1.2354 33 1 3.8281 -1.2554 -2.1123 34 1 1.6370 -1.6249 -1.2605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218966295.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:23 Heat of formation + Delta-G solvation = 31.337171 kcal Electronic energy + Delta-G solvation = -14707.292418 eV Core-core repulsion = 12447.649853 eV Total energy + Delta-G solvation = -2259.642565 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.71810 -36.04315 -33.44739 -31.62780 -30.68092 -27.21219 -24.46248 -23.76839 -21.87984 -20.82439 -19.98938 -19.29523 -16.57948 -15.47270 -14.62267 -14.41451 -14.28189 -14.10249 -13.69124 -12.95471 -12.51287 -12.22554 -11.84147 -11.64503 -11.28747 -10.95978 -10.92121 -10.76143 -10.57960 -10.35128 -10.10663 -9.90624 -9.75193 -9.37686 -9.19595 -8.49964 -7.48469 -7.18068 -6.04860 -4.06758 3.31364 3.35928 3.38933 4.38015 4.45770 4.67818 5.10618 5.28736 5.46452 5.56400 5.61204 5.75187 5.80473 5.92309 6.03139 6.07580 6.14141 6.24602 6.37874 6.48209 6.57618 6.63017 6.75419 6.80686 6.93149 7.23904 7.62979 7.78028 7.93420 8.09317 8.17316 8.38195 8.57178 9.00087 9.57294 11.02776 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027727 B = 0.012779 C = 0.009175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.596421 B = 2190.544788 C = 3051.125165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.079 0.921 4 C 0.028 3.972 5 N -0.508 5.508 6 C 0.045 3.955 7 C -0.197 4.197 8 C -0.159 4.159 9 C 0.190 3.810 10 H -0.004 1.004 11 C -0.500 4.500 12 H 0.066 0.934 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.066 3.934 20 N -0.692 5.692 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.262 0.738 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 2.697 5.990 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.097 0.903 4 C -0.102 4.102 5 N -0.232 5.232 6 C -0.064 4.064 7 C -0.234 4.234 8 C -0.197 4.197 9 C 0.083 3.917 10 H 0.014 0.986 11 C -0.539 4.539 12 H 0.084 0.916 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.063 4.063 20 N -0.321 5.321 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.689 3.651 5.356 8.624 hybrid contribution 0.996 -1.617 0.758 2.045 sum -4.693 2.033 6.114 7.971 Atomic orbital electron populations 1.21774 0.95400 1.01348 1.01348 1.21568 0.93605 0.98983 0.88468 0.90297 1.22768 0.90115 0.98180 0.99135 1.62039 1.05090 1.54085 1.02023 1.22074 1.02038 0.95123 0.87147 1.23066 0.99473 1.03433 0.97477 1.22891 0.91468 1.02332 1.03001 1.19929 0.95755 0.90697 0.85366 0.98615 1.21067 0.90086 1.35441 1.07274 0.91553 1.24941 0.98594 0.95207 0.95489 1.69843 1.35357 1.37556 1.10770 0.86553 0.85395 0.78226 0.77198 1.20439 1.21375 1.20181 1.22325 0.82684 1.00374 1.00931 1.61038 1.11101 1.22322 1.37604 0.93281 0.92851 0.92104 0.96373 0.92046 0.90175 0.89245 0.89850 0.88699 0.89753 0.92808 0.92680 0.87380 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.45 37.16 0.35 -1.64 16 2 C 0.08 1.52 3.20 -67.66 -0.22 1.30 16 3 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 4 C 0.03 0.52 4.74 -3.77 -0.02 0.51 16 5 N -0.51 -11.04 4.67 -219.90 -1.03 -12.06 16 6 C 0.05 0.91 4.23 -67.68 -0.29 0.63 16 7 C -0.20 -3.18 9.73 -26.73 -0.26 -3.44 16 8 C -0.16 -2.86 9.68 -26.69 -0.26 -3.12 16 9 C 0.19 4.75 1.90 -68.81 -0.13 4.62 16 10 H 0.00 -0.10 8.14 -51.93 -0.42 -0.53 16 11 C -0.50 -13.53 8.05 -34.44 -0.28 -13.81 16 12 H 0.07 1.81 6.62 -52.49 -0.35 1.46 16 13 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 14 N -0.90 -25.11 11.34 55.43 0.63 -24.48 16 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.07 1.58 5.76 -3.77 -0.02 1.56 16 20 N -0.69 -14.12 6.56 -106.59 -0.70 -14.82 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 1.04 6.80 -51.93 -0.35 0.69 16 26 H 0.08 1.73 8.08 -51.92 -0.42 1.31 16 27 H 0.09 1.40 7.27 -51.93 -0.38 1.02 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.11 2.88 6.13 -51.93 -0.32 2.56 16 34 H 0.33 6.52 8.80 -39.29 -0.35 6.18 16 LS Contribution 268.90 15.07 4.05 4.05 Total: -1.00 -27.39 268.90 -8.80 -36.19 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.52 Total: 6.71 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.21 Total: -11.88 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -1.10 Total: -51.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.39 -8.80 -36.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966295.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.527 kcal (2) G-P(sol) polarization free energy of solvation -27.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds