Wall clock time and date at job start Mon Mar 30 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.48425 * 2 1 4 4 C 1.53047 * 109.49044 * 120.06549 * 2 1 3 5 5 N 1.46961 * 109.36279 * 178.36991 * 4 2 1 6 6 C 1.46899 * 110.99924 * 176.81074 * 5 4 2 7 7 C 1.53000 * 117.50080 * 303.80098 * 6 5 4 8 8 C 1.53002 * 60.02940 * 252.49785 * 7 6 5 9 9 C 1.46955 * 110.88018 * 300.68010 * 5 4 2 10 10 H 1.09006 * 109.48719 * 299.35254 * 9 5 4 11 11 C 1.50697 * 109.48985 * 179.29331 * 9 5 4 12 12 H 1.08000 * 119.99911 * 359.97438 * 11 9 5 13 13 C 1.37881 * 120.00197 * 180.02562 * 11 9 5 14 14 N 1.31514 * 119.99586 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00119 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47265 * 59.99793 * 15 13 11 17 17 H 1.48497 * 109.47455 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47385 * 299.99888 * 15 13 11 19 19 C 1.53047 * 109.36601 * 59.32181 * 9 5 4 20 20 N 1.46955 * 109.48833 * 239.95888 * 2 1 3 21 21 H 1.09000 * 109.46666 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46826 * 300.04124 * 1 2 3 23 23 H 1.08993 * 109.47087 * 60.04444 * 1 2 3 24 24 H 1.09001 * 109.49093 * 58.40352 * 4 2 1 25 25 H 1.09001 * 109.48893 * 298.33404 * 4 2 1 26 26 H 1.09008 * 115.56083 * 89.48790 * 6 5 4 27 27 H 1.09002 * 117.49833 * 359.97438 * 7 6 5 28 28 H 1.09002 * 117.49953 * 144.99931 * 7 6 5 29 29 H 1.09000 * 117.49996 * 107.50493 * 8 7 6 30 30 H 1.08999 * 117.49664 * 252.51862 * 8 7 6 31 31 H 0.97003 * 119.99579 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.49093 * 61.56480 * 19 9 5 33 33 H 1.09000 * 109.48996 * 181.61421 * 19 9 5 34 34 H 1.00900 * 111.00235 * 304.57536 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7228 1.2486 5 7 3.5098 -0.7554 1.2262 6 6 4.0413 -1.3755 2.4472 7 6 3.6234 -0.7678 3.7877 8 6 5.0490 -0.5682 3.2693 9 6 4.0000 -1.4489 0.0270 10 1 3.6361 -2.4764 0.0268 11 6 5.5070 -1.4490 0.0269 12 1 6.0470 -0.9804 0.8364 13 6 6.1964 -2.0463 -1.0070 14 7 5.5388 -2.6165 -1.9929 15 14 8.0644 -2.0458 -1.0073 16 1 8.5599 -2.7450 0.2055 17 1 8.5594 -2.7467 -2.2192 18 1 8.5590 -0.6456 -1.0081 19 6 3.4894 -0.7261 -1.2217 20 7 2.0203 -0.6935 -1.1993 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5145 0.8896 23 1 -0.3633 0.5131 -0.8903 24 1 1.6545 -1.7420 1.2624 25 1 1.7023 -0.1933 2.1393 26 1 4.1770 -2.4563 2.4051 27 1 2.9544 0.0925 3.7636 28 1 3.4839 -1.4487 4.6274 29 1 5.3176 0.4231 2.9042 30 1 5.8473 -1.1181 3.7677 31 1 6.0238 -3.0364 -2.7205 32 1 3.8756 0.2931 -1.2354 33 1 3.8281 -1.2554 -2.1123 34 1 1.6370 -1.6249 -1.2605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966295.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:23 Heat of formation + Delta-G solvation = 12.006258 kcal Electronic energy + Delta-G solvation = -14708.130670 eV Core-core repulsion = 12447.649853 eV Total energy + Delta-G solvation = -2260.480817 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37166 -37.55019 -35.35420 -33.33315 -32.38840 -28.93819 -26.08570 -25.62549 -23.32691 -22.49278 -21.52950 -21.00691 -18.54621 -17.25906 -16.43222 -15.95085 -15.85941 -15.72100 -15.37758 -14.76504 -14.04262 -13.90537 -13.44627 -13.00780 -12.84861 -12.75027 -12.62531 -12.28395 -12.19900 -12.08255 -11.86593 -11.72371 -11.32479 -11.20629 -10.82684 -10.54904 -9.21726 -8.92291 -8.13612 -6.22462 1.40827 1.42405 1.50043 2.40774 3.00624 3.07068 3.17027 3.55323 4.05866 4.12137 4.22265 4.29493 4.38245 4.52811 4.63313 4.68709 4.78738 4.80679 4.92963 4.95198 5.01848 5.11406 5.23987 5.30335 5.34480 5.37205 5.66831 5.72606 6.05117 6.28187 6.41729 6.60377 6.69516 6.91615 7.45034 8.92691 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027727 B = 0.012779 C = 0.009175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.596421 B = 2190.544788 C = 3051.125165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.083 3.917 3 H 0.070 0.930 4 C 0.029 3.971 5 N -0.514 5.514 6 C 0.007 3.993 7 C -0.155 4.155 8 C -0.162 4.162 9 C 0.200 3.800 10 H -0.044 1.044 11 C -0.514 4.514 12 H 0.061 0.939 13 C 0.013 3.987 14 N -0.920 5.920 15 Si 0.959 3.041 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.081 3.919 20 N -0.689 5.689 21 H 0.053 0.947 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.011 0.989 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.262 0.738 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 3.538 7.540 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.028 4.028 3 H 0.089 0.911 4 C -0.100 4.100 5 N -0.238 5.238 6 C -0.102 4.102 7 C -0.192 4.192 8 C -0.200 4.200 9 C 0.091 3.909 10 H -0.027 1.027 11 C -0.553 4.553 12 H 0.079 0.921 13 C -0.186 4.186 14 N -0.560 5.560 15 Si 0.784 3.216 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.049 4.049 20 N -0.317 5.317 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.030 0.970 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.379 4.501 6.924 10.435 hybrid contribution 1.167 -1.878 0.316 2.234 sum -5.211 2.623 7.241 9.298 Atomic orbital electron populations 1.21695 0.91843 1.02236 1.02980 1.21716 0.96340 0.97806 0.86931 0.91146 1.22867 0.88300 0.98224 1.00632 1.62003 1.07019 1.53276 1.01509 1.22085 1.05421 0.94216 0.88467 1.23138 0.97763 1.03111 0.95190 1.22929 0.92936 1.01435 1.02653 1.19658 0.94900 0.88881 0.87445 1.02701 1.21321 0.91430 1.35442 1.07147 0.92111 1.25695 1.02832 0.94911 0.95176 1.69977 1.36807 1.38051 1.11169 0.85598 0.80321 0.78325 0.77308 1.19914 1.20942 1.19698 1.21909 0.85111 0.98455 0.99405 1.60984 1.08635 1.22629 1.39463 0.92754 0.90202 0.91519 0.97040 0.89336 0.92642 0.87962 0.87120 0.89644 0.88628 0.92875 0.94313 0.90299 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.45 71.98 0.68 -2.60 16 2 C 0.08 2.85 3.20 44.92 0.14 2.99 16 3 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.03 1.05 4.74 86.31 0.41 1.46 16 5 N -0.51 -22.33 4.67 -849.63 -3.97 -26.30 16 6 C 0.01 0.29 4.23 44.94 0.19 0.48 16 7 C -0.15 -4.52 9.73 30.60 0.30 -4.22 16 8 C -0.16 -5.57 9.68 30.62 0.30 -5.28 16 9 C 0.20 10.32 1.90 44.17 0.08 10.40 16 10 H -0.04 -2.60 8.14 -2.38 -0.02 -2.62 16 11 C -0.51 -28.59 8.05 25.60 0.21 -28.38 16 12 H 0.06 3.37 6.62 -2.91 -0.02 3.35 16 13 C 0.01 0.70 5.30 84.66 0.45 1.15 16 14 N -0.92 -53.06 11.34 21.45 0.24 -52.82 16 15 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.08 4.04 5.76 86.31 0.50 4.54 16 20 N -0.69 -28.22 6.56 -491.13 -3.22 -31.44 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.09 2.71 6.80 -2.39 -0.02 2.69 16 26 H 0.06 2.46 8.08 -2.38 -0.02 2.44 16 27 H 0.10 2.77 7.27 -2.39 -0.02 2.75 16 28 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 4.39 6.13 -2.39 -0.01 4.37 16 34 H 0.33 13.27 8.80 -89.69 -0.79 12.48 16 Total: -1.00 -60.31 268.90 -1.39 -61.69 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.28 Total: 22.15 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 3.25 Total: -19.47 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -6.95 Total: -110.56 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -60.31 -1.39 -61.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966295.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.699 kcal (2) G-P(sol) polarization free energy of solvation -60.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds