Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99669 * 2 1 4 4 H 1.48500 * 109.47188 * 269.99815 * 3 2 1 5 5 H 1.48500 * 109.47541 * 30.00329 * 3 2 1 6 6 H 1.48503 * 109.47052 * 150.00090 * 3 2 1 7 7 C 1.37872 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00136 * 359.71983 * 7 2 1 9 9 C 1.50696 * 120.00190 * 179.97438 * 7 2 1 10 10 H 1.09006 * 108.94447 * 300.96166 * 9 7 2 11 11 C 1.54202 * 108.96657 * 182.28182 * 9 7 2 12 12 N 1.44579 * 108.86911 * 160.53396 * 11 9 7 13 13 C 1.46892 * 111.00137 * 220.35130 * 12 11 9 14 14 C 1.52994 * 117.50042 * 131.59192 * 13 12 11 15 15 C 1.52998 * 117.50307 * 62.92703 * 13 12 11 16 16 C 1.48074 * 113.85960 * 94.21928 * 12 11 9 17 17 C 1.53688 * 112.46927 * 318.32190 * 16 12 11 18 18 C 1.50796 * 112.10086 * 318.55669 * 17 16 12 19 19 N 1.40016 * 108.96226 * 59.71620 * 9 7 2 20 20 H 0.96994 * 120.00357 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.57064 * 280.34662 * 11 9 7 22 22 H 1.09001 * 109.57477 * 40.71776 * 11 9 7 23 23 H 1.09005 * 115.54968 * 277.25913 * 13 12 11 24 24 H 1.08997 * 117.50248 * 359.97438 * 14 13 12 25 25 H 1.09000 * 117.50056 * 145.01621 * 14 13 12 26 26 H 1.08996 * 117.50364 * 214.97969 * 15 13 12 27 27 H 1.09006 * 117.49482 * 359.97438 * 15 13 12 28 28 H 1.08996 * 108.87684 * 197.55016 * 16 12 11 29 29 H 1.09002 * 108.79681 * 79.03753 * 16 12 11 30 30 H 1.09001 * 108.95559 * 197.88059 * 17 16 12 31 31 H 1.09001 * 108.95597 * 79.23169 * 17 16 12 32 32 H 1.09002 * 109.63477 * 332.85856 * 18 17 16 33 33 H 1.09003 * 109.80508 * 212.35779 * 18 17 16 34 34 H 1.00901 * 110.99714 * 56.18697 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 0.0036 9 6 3.5115 -1.1940 -0.0011 10 1 3.8651 -0.6634 -0.8852 11 6 4.0127 -2.6512 -0.0597 12 7 5.3843 -2.6559 -0.5167 13 6 5.6237 -3.7626 -1.4524 14 6 6.3413 -3.4365 -2.7637 15 6 4.8442 -3.7559 -2.7689 16 6 6.3806 -2.6620 0.5787 17 6 5.9949 -1.7183 1.7288 18 6 5.4390 -0.4096 1.2266 19 7 3.9670 -0.5265 1.1423 20 1 -0.4850 0.8400 -0.0004 21 1 3.9573 -3.0966 0.9337 22 1 3.3950 -3.2222 -0.7528 23 1 5.8285 -4.7301 -0.9937 24 1 6.6354 -2.4006 -2.9323 25 1 7.0179 -4.1894 -3.1679 26 1 4.5366 -4.7188 -3.1766 27 1 4.1534 -2.9304 -2.9405 28 1 7.3466 -2.3542 0.1786 29 1 6.4676 -3.6762 0.9687 30 1 6.8789 -1.5184 2.3344 31 1 5.2446 -2.2063 2.3508 32 1 5.8463 -0.1935 0.2389 33 1 5.7038 0.3927 1.9154 34 1 3.5890 -0.9442 1.9794 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = 26.701195 kcal Electronic energy + Delta-G solvation = -14741.797417 eV Core-core repulsion = 12481.953820 eV Total energy + Delta-G solvation = -2259.843596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.46450 -37.91552 -35.17638 -33.96069 -32.98535 -28.42736 -27.04310 -25.26434 -23.16250 -22.15688 -21.85861 -20.55519 -19.03288 -17.51768 -16.67191 -16.27172 -15.78036 -15.63402 -15.48308 -14.82043 -14.43700 -14.04274 -13.55366 -13.30505 -12.99289 -12.64222 -12.46209 -12.31810 -11.97105 -11.92718 -11.67219 -11.53361 -11.30780 -11.00053 -10.87379 -10.65813 -9.15193 -8.45329 -8.20002 -6.31948 1.53623 1.59151 1.96510 2.65129 2.83344 2.95592 3.17715 3.86059 3.98900 4.05056 4.11438 4.15369 4.27935 4.40183 4.46545 4.54262 4.80315 4.80893 4.87982 4.90345 5.01148 5.02949 5.09240 5.13994 5.33226 5.35317 5.40507 5.74244 6.18114 6.30090 6.33366 6.68156 7.01953 7.07528 7.48330 8.93520 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.011845 C = 0.009941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.265730 B = 2363.378446 C = 2815.870211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.306 1.306 5 H -0.315 1.315 6 H -0.160 1.160 7 C -0.525 4.525 8 H 0.024 0.976 9 C 0.221 3.779 10 H 0.021 0.979 11 C 0.059 3.941 12 N -0.534 5.534 13 C -0.004 4.004 14 C -0.144 4.144 15 C -0.181 4.181 16 C 0.069 3.931 17 C -0.145 4.145 18 C 0.065 3.935 19 N -0.693 5.693 20 H 0.261 0.739 21 H 0.022 0.978 22 H 0.046 0.954 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.644 -5.244 0.313 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.235 1.235 5 H -0.244 1.244 6 H -0.080 1.080 7 C -0.563 4.563 8 H 0.042 0.958 9 C 0.109 3.891 10 H 0.038 0.962 11 C -0.071 4.071 12 N -0.259 5.259 13 C -0.112 4.112 14 C -0.182 4.182 15 C -0.219 4.219 16 C -0.057 4.057 17 C -0.185 4.185 18 C -0.063 4.063 19 N -0.324 5.324 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.065 0.935 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.538 -4.160 -0.183 17.054 hybrid contribution -0.740 -1.029 0.454 1.346 sum 15.798 -5.188 0.271 16.630 Atomic orbital electron populations 1.70114 1.08857 1.27917 1.52568 1.25876 0.95055 1.03856 0.92447 0.86230 0.84323 0.76197 0.77357 1.23477 1.24383 1.07996 1.21287 0.91243 0.92442 1.51366 0.95767 1.18052 0.91631 0.89061 0.90375 0.96151 1.22481 0.87712 0.99839 0.97093 1.60593 1.03172 1.43541 1.18580 1.22492 1.07085 0.93397 0.88267 1.23077 0.93962 1.02978 0.98188 1.23019 0.95672 1.03122 1.00069 1.22362 0.95084 0.97853 0.90425 1.22121 1.02260 0.96747 0.97324 1.21725 0.87165 0.96146 1.01270 1.58776 1.09131 1.58737 1.05734 0.93100 0.95922 0.93504 0.89228 0.89129 0.86424 0.87327 0.90740 0.89880 0.94946 0.88626 0.93226 0.91825 0.90322 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.70 13.96 21.45 0.30 -61.40 16 2 C 0.03 1.53 5.47 84.65 0.46 1.99 16 3 Si 0.93 46.28 26.90 68.60 1.85 48.12 16 4 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 5 H -0.32 -15.98 7.11 99.48 0.71 -15.27 16 6 H -0.16 -7.00 5.08 99.48 0.51 -6.49 16 7 C -0.52 -30.28 9.08 25.60 0.23 -30.05 16 8 H 0.02 1.55 7.96 -2.91 -0.02 1.53 16 9 C 0.22 10.19 1.58 45.82 0.07 10.26 16 10 H 0.02 1.03 7.42 -2.38 -0.02 1.01 16 11 C 0.06 2.38 4.63 87.15 0.40 2.79 16 12 N -0.53 -17.52 4.07 -869.98 -3.54 -21.06 16 13 C 0.00 -0.11 5.01 44.91 0.23 0.12 16 14 C -0.14 -3.44 10.46 30.62 0.32 -3.12 16 15 C -0.18 -5.16 9.44 30.62 0.29 -4.87 16 16 C 0.07 1.84 5.49 86.31 0.47 2.31 16 17 C -0.15 -3.77 5.35 30.11 0.16 -3.61 16 18 C 0.07 2.04 6.09 85.39 0.52 2.56 16 19 N -0.69 -28.05 2.73 -508.99 -1.39 -29.44 16 20 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 21 H 0.02 0.90 6.93 -2.38 -0.02 0.89 16 22 H 0.05 2.05 6.70 -2.39 -0.02 2.03 16 23 H 0.09 2.32 8.06 -2.38 -0.02 2.30 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.07 2.59 8.10 -2.38 -0.02 2.57 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 29 H 0.03 0.81 7.97 -2.39 -0.02 0.79 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.40 6.80 -2.39 -0.02 1.38 16 32 H 0.06 2.12 7.57 -2.39 -0.02 2.11 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.33 13.52 8.06 -89.69 -0.72 12.80 16 Total: -1.00 -66.96 262.28 0.52 -66.44 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.14 Total: 18.95 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 3.16 Total: -21.61 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.63 Total: -111.90 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.85 Total: 48.12 kcal Total: -66.96 0.52 -66.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.142 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds