Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48499 * 109.47164 * 240.00136 * 3 2 1 5 5 H 1.48497 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47264 * 119.99989 * 3 2 1 7 7 C 1.37884 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99477 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.73365 * 60.66010 * 9 7 2 11 11 C 1.50780 * 109.73302 * 181.35920 * 9 7 2 12 12 N 1.47743 * 111.91003 * 214.26862 * 11 9 7 13 13 C 1.46904 * 111.00056 * 192.81838 * 12 11 9 14 14 C 1.53007 * 117.49343 * 248.74554 * 13 12 11 15 15 C 1.53006 * 117.49615 * 180.08780 * 13 12 11 16 16 C 1.48071 * 113.78697 * 318.87727 * 12 11 9 17 17 C 1.50792 * 112.87824 * 318.28251 * 16 12 11 18 18 C 1.54523 * 108.92639 * 92.73290 * 17 16 12 19 19 N 1.40085 * 111.44886 * 283.90398 * 18 17 16 20 20 H 0.96998 * 119.99312 * 359.97438 * 1 2 3 21 21 H 1.09000 * 108.99624 * 334.89429 * 11 9 7 22 22 H 1.09005 * 108.99337 * 93.72170 * 11 9 7 23 23 H 1.08991 * 115.55223 * 34.41006 * 13 12 11 24 24 H 1.08995 * 117.49874 * 359.97438 * 14 13 12 25 25 H 1.08998 * 117.49485 * 145.02128 * 14 13 12 26 26 H 1.09002 * 117.49559 * 214.97305 * 15 13 12 27 27 H 1.08999 * 117.50046 * 359.97438 * 15 13 12 28 28 H 1.09003 * 108.78736 * 79.17775 * 16 12 11 29 29 H 1.09001 * 108.79377 * 197.50745 * 16 12 11 30 30 H 1.08999 * 109.62341 * 332.87020 * 17 16 12 31 31 H 1.08997 * 109.52063 * 212.53152 * 17 16 12 32 32 H 1.09002 * 109.07452 * 163.41616 * 18 17 16 33 33 H 1.08995 * 109.07262 * 44.38936 * 18 17 16 34 34 H 1.00901 * 110.99914 * 188.18120 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6313 -2.5663 -0.8947 11 6 2.2251 -3.6495 0.0325 12 7 1.7326 -4.8113 -0.7359 13 6 2.5318 -6.0099 -0.4484 14 6 3.4212 -6.5515 -1.5695 15 6 2.1493 -7.3038 -1.1698 16 6 0.2881 -5.0801 -0.5519 17 6 -0.1577 -4.9328 0.8811 18 6 -0.6635 -3.4897 1.1028 19 7 0.4002 -2.5838 1.2036 20 1 -0.4849 0.8401 0.0004 21 1 3.1753 -3.3221 -0.3896 22 1 2.3826 -3.9515 1.0680 23 1 2.9025 -6.0938 0.5731 24 1 3.4128 -6.0188 -2.5203 25 1 4.3767 -6.9922 -1.2853 26 1 2.2687 -8.2391 -0.6229 27 1 1.3044 -7.2659 -1.8574 28 1 -0.2799 -4.3849 -1.1702 29 1 0.0753 -6.0969 -0.8818 30 1 0.6814 -5.1318 1.5478 31 1 -0.9636 -5.6374 1.0860 32 1 -1.2494 -3.4548 2.0213 33 1 -1.2981 -3.2020 0.2646 34 1 0.0723 -1.6703 1.4796 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218966574.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = 35.246997 kcal Electronic energy + Delta-G solvation = -14619.065930 eV Core-core repulsion = 12359.592908 eV Total energy + Delta-G solvation = -2259.473023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.78484 -36.35016 -33.23322 -32.31987 -30.73962 -26.93269 -24.96494 -23.82194 -21.98190 -21.12175 -19.49519 -18.61908 -16.98199 -15.77386 -15.33912 -14.51714 -14.41608 -14.21696 -13.51766 -12.98251 -12.51674 -12.39176 -11.75711 -11.43161 -11.32041 -11.17667 -10.95585 -10.70928 -10.60676 -10.44687 -10.23137 -9.80345 -9.51073 -9.44165 -9.08643 -8.65029 -7.50211 -6.81853 -6.11626 -4.16375 3.30503 3.34732 3.37850 4.07978 4.31801 4.46803 5.13154 5.21880 5.25816 5.49272 5.53454 5.67341 5.81452 5.85173 5.94402 6.10652 6.18338 6.28345 6.34181 6.45030 6.55311 6.62542 6.74171 6.79481 6.95554 7.10230 7.48649 7.76640 7.84132 7.97872 8.19693 8.80202 8.99259 9.25333 9.50565 10.96779 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040952 B = 0.009436 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.568288 B = 2966.743792 C = 3472.612892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.222 3.778 10 H 0.013 0.987 11 C 0.079 3.921 12 N -0.522 5.522 13 C 0.018 3.982 14 C -0.169 4.169 15 C -0.183 4.183 16 C 0.062 3.938 17 C -0.147 4.147 18 C 0.088 3.912 19 N -0.706 5.706 20 H 0.264 0.736 21 H 0.065 0.935 22 H 0.032 0.968 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.005 0.995 34 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -9.901 -0.123 10.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.115 3.885 10 H 0.031 0.969 11 C -0.048 4.048 12 N -0.246 5.246 13 C -0.092 4.092 14 C -0.207 4.207 15 C -0.221 4.221 16 C -0.065 4.065 17 C -0.186 4.186 18 C -0.044 4.044 19 N -0.343 5.343 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.675 -10.096 -0.331 10.239 hybrid contribution -0.336 1.174 0.332 1.265 sum 1.339 -8.922 0.002 9.022 Atomic orbital electron populations 1.69789 1.05972 1.27182 1.50950 1.25046 0.94960 0.99439 0.94372 0.86535 0.79509 0.82532 0.78711 1.20195 1.21324 1.20112 1.21222 0.93204 0.90007 1.50331 0.92055 1.18699 0.90454 0.91424 0.87922 0.96912 1.22130 0.99172 0.89224 0.94224 1.62029 1.01799 1.02733 1.58042 1.22426 1.01214 0.90651 0.94897 1.23044 0.93823 1.03211 1.00578 1.23027 0.99758 0.94992 1.04299 1.21924 0.88587 1.00268 0.95745 1.22099 1.00607 0.97823 0.98110 1.20643 0.93311 0.92366 0.98090 1.58082 1.23481 1.14461 1.38264 0.92579 0.91685 0.95017 0.90066 0.88385 0.89416 0.89374 0.88640 0.91267 0.92414 0.91790 0.92640 0.93872 0.97726 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.19 11.75 55.43 0.65 -24.54 16 2 C 0.06 1.73 5.14 -17.82 -0.09 1.64 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.93 8.61 -34.44 -0.30 -14.23 16 8 H 0.06 1.65 7.46 -52.49 -0.39 1.26 16 9 C 0.22 5.65 2.07 -69.55 -0.14 5.50 16 10 H 0.01 0.38 6.78 -51.93 -0.35 0.03 16 11 C 0.08 1.77 4.66 -4.47 -0.02 1.74 16 12 N -0.52 -10.16 4.89 -227.66 -1.11 -11.27 16 13 C 0.02 0.29 5.24 -67.70 -0.35 -0.07 16 14 C -0.17 -2.35 10.46 -26.68 -0.28 -2.63 16 15 C -0.18 -2.44 9.45 -26.69 -0.25 -2.69 16 16 C 0.06 1.14 5.08 -4.29 -0.02 1.12 16 17 C -0.15 -2.68 5.64 -27.04 -0.15 -2.83 16 18 C 0.09 1.87 6.04 -6.55 -0.04 1.83 16 19 N -0.71 -17.15 5.91 -112.41 -0.66 -17.82 16 20 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 21 H 0.06 1.48 7.49 -51.93 -0.39 1.09 16 22 H 0.03 0.72 6.92 -51.93 -0.36 0.36 16 23 H 0.08 1.33 7.92 -51.93 -0.41 0.91 16 24 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.29 7.16 -51.93 -0.37 0.91 16 28 H 0.07 1.42 6.52 -51.93 -0.34 1.08 16 29 H 0.06 0.93 6.06 -51.93 -0.31 0.61 16 30 H 0.06 1.22 7.08 -51.93 -0.37 0.86 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.00 0.11 7.59 -51.93 -0.39 -0.28 16 34 H 0.36 9.62 6.50 -39.29 -0.26 9.37 16 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -27.46 262.30 -9.04 -36.50 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.19 Total: 7.72 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.65 Total: -10.62 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -1.13 Total: -53.63 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.46 -9.04 -36.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966574.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.748 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds