Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48499 * 109.47164 * 240.00136 * 3 2 1 5 5 H 1.48497 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47264 * 119.99989 * 3 2 1 7 7 C 1.37884 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99477 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.73365 * 60.66010 * 9 7 2 11 11 C 1.50780 * 109.73302 * 181.35920 * 9 7 2 12 12 N 1.47743 * 111.91003 * 214.26862 * 11 9 7 13 13 C 1.46904 * 111.00056 * 192.81838 * 12 11 9 14 14 C 1.53007 * 117.49343 * 248.74554 * 13 12 11 15 15 C 1.53006 * 117.49615 * 180.08780 * 13 12 11 16 16 C 1.48071 * 113.78697 * 318.87727 * 12 11 9 17 17 C 1.50792 * 112.87824 * 318.28251 * 16 12 11 18 18 C 1.54523 * 108.92639 * 92.73290 * 17 16 12 19 19 N 1.40085 * 111.44886 * 283.90398 * 18 17 16 20 20 H 0.96998 * 119.99312 * 359.97438 * 1 2 3 21 21 H 1.09000 * 108.99624 * 334.89429 * 11 9 7 22 22 H 1.09005 * 108.99337 * 93.72170 * 11 9 7 23 23 H 1.08991 * 115.55223 * 34.41006 * 13 12 11 24 24 H 1.08995 * 117.49874 * 359.97438 * 14 13 12 25 25 H 1.08998 * 117.49485 * 145.02128 * 14 13 12 26 26 H 1.09002 * 117.49559 * 214.97305 * 15 13 12 27 27 H 1.08999 * 117.50046 * 359.97438 * 15 13 12 28 28 H 1.09003 * 108.78736 * 79.17775 * 16 12 11 29 29 H 1.09001 * 108.79377 * 197.50745 * 16 12 11 30 30 H 1.08999 * 109.62341 * 332.87020 * 17 16 12 31 31 H 1.08997 * 109.52063 * 212.53152 * 17 16 12 32 32 H 1.09002 * 109.07452 * 163.41616 * 18 17 16 33 33 H 1.08995 * 109.07262 * 44.38936 * 18 17 16 34 34 H 1.00901 * 110.99914 * 188.18120 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6313 -2.5663 -0.8947 11 6 2.2251 -3.6495 0.0325 12 7 1.7326 -4.8113 -0.7359 13 6 2.5318 -6.0099 -0.4484 14 6 3.4212 -6.5515 -1.5695 15 6 2.1493 -7.3038 -1.1698 16 6 0.2881 -5.0801 -0.5519 17 6 -0.1577 -4.9328 0.8811 18 6 -0.6635 -3.4897 1.1028 19 7 0.4002 -2.5838 1.2036 20 1 -0.4849 0.8401 0.0004 21 1 3.1753 -3.3221 -0.3896 22 1 2.3826 -3.9515 1.0680 23 1 2.9025 -6.0938 0.5731 24 1 3.4128 -6.0188 -2.5203 25 1 4.3767 -6.9922 -1.2853 26 1 2.2687 -8.2391 -0.6229 27 1 1.3044 -7.2659 -1.8574 28 1 -0.2799 -4.3849 -1.1702 29 1 0.0753 -6.0969 -0.8818 30 1 0.6814 -5.1318 1.5478 31 1 -0.9636 -5.6374 1.0860 32 1 -1.2494 -3.4548 2.0213 33 1 -1.2981 -3.2020 0.2646 34 1 0.0723 -1.6703 1.4796 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966574.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = 16.125799 kcal Electronic energy + Delta-G solvation = -14619.895088 eV Core-core repulsion = 12359.592908 eV Total energy + Delta-G solvation = -2260.302180 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35885 -37.82128 -35.08907 -33.96770 -32.60724 -28.74109 -26.69974 -25.65454 -23.07402 -22.58875 -21.29796 -20.17458 -18.90349 -17.32020 -17.07821 -16.30800 -15.99904 -15.77758 -15.30451 -14.55221 -14.23592 -13.95081 -13.51730 -13.15204 -12.89479 -12.80811 -12.49154 -12.37608 -12.20358 -12.17086 -11.67313 -11.34913 -11.14288 -11.08866 -10.87066 -10.72925 -9.01891 -8.79721 -8.20598 -6.33992 1.42817 1.44259 1.52272 2.40029 2.89439 2.98977 3.08356 3.87410 4.02647 4.07665 4.15953 4.18972 4.33937 4.47003 4.57743 4.70390 4.79170 4.82313 4.90979 4.99235 4.99621 5.04473 5.12885 5.23120 5.37086 5.37391 5.49276 5.75476 6.04946 6.28699 6.41773 6.70021 6.96133 7.26217 7.37615 8.86530 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040952 B = 0.009436 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.568288 B = 2966.743792 C = 3472.612892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.019 3.981 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.227 3.773 10 H -0.028 1.028 11 C 0.096 3.904 12 N -0.533 5.533 13 C -0.013 4.013 14 C -0.163 4.163 15 C -0.158 4.158 16 C 0.064 3.936 17 C -0.133 4.133 18 C 0.082 3.918 19 N -0.705 5.705 20 H 0.266 0.734 21 H 0.053 0.947 22 H 0.027 0.973 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.060 0.940 33 H -0.018 1.018 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -11.340 0.147 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.077 0.923 9 C 0.120 3.880 10 H -0.010 1.010 11 C -0.032 4.032 12 N -0.257 5.257 13 C -0.122 4.122 14 C -0.201 4.201 15 C -0.195 4.195 16 C -0.063 4.063 17 C -0.173 4.173 18 C -0.050 4.050 19 N -0.339 5.339 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.000 1.000 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.274 -11.568 -0.066 11.790 hybrid contribution -0.554 1.583 0.221 1.692 sum 1.720 -9.986 0.155 10.134 Atomic orbital electron populations 1.69908 1.07254 1.27980 1.51152 1.25819 0.95778 1.02720 0.93730 0.85496 0.78274 0.78292 0.78869 1.19795 1.20814 1.19378 1.21559 0.93387 0.91426 1.51067 0.92281 1.18552 0.90453 0.92345 0.86667 1.01002 1.21747 0.97683 0.89540 0.94197 1.61893 1.02731 1.03470 1.57643 1.22503 1.02971 0.90837 0.95850 1.23116 0.95267 1.02704 0.98988 1.23125 0.99112 0.94372 1.02912 1.21911 0.87824 1.01074 0.95513 1.22002 1.01446 0.96130 0.97702 1.20806 0.92491 0.93694 0.97984 1.58153 1.24372 1.14027 1.37381 0.92503 0.92861 0.95484 0.90000 0.89551 0.87127 0.86568 0.88639 0.94284 0.89307 0.92263 0.89120 0.92173 0.99973 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.88 11.75 21.45 0.25 -52.63 16 2 C 0.02 1.05 5.14 84.66 0.44 1.48 16 3 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -30.12 8.61 25.60 0.22 -29.90 16 8 H 0.06 3.26 7.46 -2.91 -0.02 3.24 16 9 C 0.23 11.96 2.07 43.30 0.09 12.05 16 10 H -0.03 -1.65 6.78 -2.39 -0.02 -1.66 16 11 C 0.10 4.35 4.66 85.42 0.40 4.75 16 12 N -0.53 -20.59 4.89 -874.17 -4.27 -24.86 16 13 C -0.01 -0.39 5.24 44.92 0.24 -0.15 16 14 C -0.16 -4.14 10.46 30.62 0.32 -3.82 16 15 C -0.16 -3.64 9.45 30.62 0.29 -3.35 16 16 C 0.06 2.31 5.08 85.36 0.43 2.74 16 17 C -0.13 -4.67 5.64 30.40 0.17 -4.50 16 18 C 0.08 3.50 6.04 88.05 0.53 4.03 16 19 N -0.70 -35.06 5.91 -509.55 -3.01 -38.07 16 20 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 21 H 0.05 2.49 7.49 -2.39 -0.02 2.47 16 22 H 0.03 1.23 6.92 -2.38 -0.02 1.21 16 23 H 0.08 2.51 7.92 -2.39 -0.02 2.49 16 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.10 2.23 7.16 -2.39 -0.02 2.22 16 28 H 0.04 1.64 6.52 -2.39 -0.02 1.62 16 29 H 0.09 2.63 6.06 -2.39 -0.01 2.61 16 30 H 0.06 2.16 7.08 -2.39 -0.02 2.15 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H -0.02 -0.83 7.59 -2.39 -0.02 -0.85 16 34 H 0.35 18.97 6.50 -89.69 -0.58 18.38 16 Total: -1.00 -60.26 262.30 -1.38 -61.64 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.50 Total: 24.97 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 3.13 Total: -16.67 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -7.03 Total: -115.56 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -60.26 -1.38 -61.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966574.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.766 kcal (2) G-P(sol) polarization free energy of solvation -60.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds