Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99673 * 2 1 4 4 N 1.46904 * 109.47135 * 124.99631 * 3 2 1 5 5 C 1.48065 * 111.00021 * 293.95876 * 4 3 2 6 6 C 1.53695 * 112.46659 * 192.19337 * 5 4 3 7 7 C 1.50808 * 112.09513 * 318.55510 * 6 5 4 8 8 N 1.47904 * 108.49446 * 92.56112 * 7 6 5 9 9 C 1.40021 * 114.06852 * 280.05700 * 8 7 6 10 10 H 1.09000 * 108.95735 * 301.21897 * 9 8 7 11 11 C 1.50706 * 108.95684 * 182.47194 * 9 8 7 12 12 H 1.07998 * 119.99629 * 239.99728 * 11 9 8 13 13 C 1.37875 * 119.99955 * 60.00299 * 11 9 8 14 14 N 1.31515 * 119.99932 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99908 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47233 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47364 * 119.99503 * 15 13 11 18 18 H 1.48500 * 109.46997 * 239.99827 * 15 13 11 19 19 C 1.44569 * 110.99714 * 166.25720 * 4 3 2 20 20 H 1.08004 * 119.99573 * 180.02562 * 1 2 3 21 21 H 1.07994 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.00368 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.47139 * 5.00180 * 3 2 1 24 24 H 1.08995 * 109.47471 * 244.99801 * 3 2 1 25 25 H 1.08992 * 108.89020 * 71.42147 * 5 4 3 26 26 H 1.09001 * 108.88215 * 312.95973 * 5 4 3 27 27 H 1.08999 * 108.96284 * 197.88162 * 6 5 4 28 28 H 1.09005 * 108.95560 * 79.22606 * 6 5 4 29 29 H 1.08995 * 109.63301 * 332.85472 * 7 6 5 30 30 H 1.09001 * 109.79725 * 212.35733 * 7 6 5 31 31 H 1.00903 * 111.00411 * 46.34578 * 8 7 6 32 32 H 0.97003 * 119.99476 * 180.02562 * 14 13 11 33 33 H 1.09007 * 109.57299 * 100.53962 * 19 4 3 34 34 H 1.08995 * 109.57444 * 340.16420 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9962 1.3321 1.1346 5 6 2.2653 1.3472 2.4222 6 6 3.1800 1.6750 3.6130 7 6 4.5126 0.9760 3.5139 8 7 5.4669 1.8793 2.8350 9 6 5.3398 1.9007 1.4407 10 1 5.4889 0.8917 1.0561 11 6 6.3998 2.8049 0.8663 12 1 6.1150 3.6694 0.2851 13 6 7.7331 2.5283 1.0826 14 7 8.0798 1.4756 1.7906 15 14 9.0470 3.6486 0.3699 16 1 8.4004 4.7543 -0.3814 17 1 9.8679 4.2121 1.4717 18 1 9.9172 2.8699 -0.5475 19 6 3.9535 2.4061 0.9928 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5400 0.9352 0.0004 22 1 1.8501 -0.9352 -0.0004 23 1 1.3584 2.1317 0.0896 24 1 2.6213 1.4027 -0.9313 25 1 1.8139 0.3683 2.5832 26 1 1.4734 2.0944 2.3695 27 1 2.6861 1.3666 4.5344 28 1 3.3466 2.7518 3.6457 29 1 4.4027 0.0582 2.9363 30 1 4.8801 0.7385 4.5122 31 1 5.4165 2.8119 3.2169 32 1 9.0179 1.2813 1.9431 33 1 3.6529 3.2480 1.6165 34 1 3.9987 2.7197 -0.0501 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218966627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = 35.647943 kcal Electronic energy + Delta-G solvation = -14470.560125 eV Core-core repulsion = 12211.104488 eV Total energy + Delta-G solvation = -2259.455636 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.64678 -35.47112 -33.07432 -32.31127 -30.92646 -27.20329 -25.30099 -24.75896 -22.72494 -20.34021 -19.47203 -19.05458 -16.72100 -15.80464 -14.65332 -14.64219 -14.28172 -14.12602 -13.72734 -13.27980 -12.88616 -12.33139 -11.99480 -11.63124 -11.37129 -11.17507 -10.90952 -10.82654 -10.62932 -10.47082 -10.27155 -9.99218 -9.55574 -9.26585 -8.74945 -8.33009 -7.66184 -6.51933 -5.77703 -3.93061 2.39456 3.37158 3.45446 3.48116 4.42997 4.59934 5.11906 5.29613 5.33282 5.45370 5.49654 5.67896 5.75039 5.87473 6.04331 6.05504 6.09122 6.23105 6.34876 6.42225 6.57954 6.70286 6.73618 6.86087 6.93522 7.04351 7.53862 7.68143 7.93112 7.99911 8.37906 8.93018 9.14857 9.46239 9.76309 11.25910 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041419 B = 0.008726 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.851452 B = 3208.085113 C = 3607.646655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.127 4.127 3 C 0.082 3.918 4 N -0.542 5.542 5 C 0.071 3.929 6 C -0.153 4.153 7 C 0.069 3.931 8 N -0.650 5.650 9 C 0.240 3.760 10 H 0.043 0.957 11 C -0.539 4.539 12 H 0.050 0.950 13 C 0.084 3.916 14 N -0.847 5.847 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.028 3.972 20 H 0.094 0.906 21 H 0.090 0.910 22 H 0.113 0.887 23 H 0.027 0.973 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.319 0.681 32 H 0.253 0.747 33 H 0.020 0.980 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 -0.934 0.201 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.145 4.145 3 C -0.046 4.046 4 N -0.266 5.266 5 C -0.056 4.056 6 C -0.193 4.193 7 C -0.061 4.061 8 N -0.277 5.277 9 C 0.129 3.871 10 H 0.061 0.939 11 C -0.578 4.578 12 H 0.068 0.932 13 C -0.123 4.123 14 N -0.482 5.482 15 Si 0.708 3.292 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.102 4.102 20 H 0.113 0.887 21 H 0.108 0.892 22 H 0.131 0.869 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.515 -1.918 0.253 10.691 hybrid contribution -0.639 1.892 -0.431 2.044 sum -11.154 -0.026 -0.179 11.156 Atomic orbital electron populations 1.23747 0.95942 1.01281 1.03873 1.23055 0.95371 0.99213 0.96903 1.21319 0.94267 0.93668 0.95317 1.60921 1.16325 1.48874 1.00514 1.22262 0.94356 0.99600 0.89419 1.22307 0.99432 1.00988 0.96541 1.21642 0.88127 0.97769 0.98548 1.58201 1.51091 1.12049 1.06403 1.18054 0.86727 0.97566 0.84768 0.93881 1.21087 0.90809 1.11607 1.34312 0.93165 1.24931 0.98268 0.94725 0.94353 1.70134 1.15844 1.25442 1.36773 0.86769 0.82406 0.81142 0.78891 1.20058 1.21160 1.21201 1.23251 0.96089 0.90480 1.00378 0.88735 0.89195 0.86914 0.95506 0.89948 0.91831 0.96470 0.92470 0.92776 0.91256 0.93025 0.86159 0.93660 0.96136 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.50 14.32 29.01 0.42 -2.08 16 2 C -0.13 -1.76 8.83 -36.03 -0.32 -2.08 16 3 C 0.08 1.30 5.31 -4.97 -0.03 1.27 16 4 N -0.54 -10.03 3.93 -235.75 -0.93 -10.95 16 5 C 0.07 1.18 5.07 -2.82 -0.01 1.16 16 6 C -0.15 -2.57 5.35 -27.47 -0.15 -2.72 16 7 C 0.07 1.37 6.28 -4.37 -0.03 1.35 16 8 N -0.65 -15.46 5.31 -112.22 -0.60 -16.06 16 9 C 0.24 6.00 2.01 -71.78 -0.14 5.86 16 10 H 0.04 1.24 8.07 -51.93 -0.42 0.82 16 11 C -0.54 -14.80 8.50 -34.44 -0.29 -15.09 16 12 H 0.05 1.37 7.71 -52.49 -0.40 0.96 16 13 C 0.08 2.34 5.38 -17.82 -0.10 2.24 16 14 N -0.85 -24.83 12.74 55.43 0.71 -24.12 16 15 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C 0.03 0.59 4.75 -4.44 -0.02 0.57 16 20 H 0.09 0.97 8.06 -52.48 -0.42 0.55 16 21 H 0.09 1.02 7.84 -52.49 -0.41 0.61 16 22 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 23 H 0.03 0.41 7.63 -51.92 -0.40 0.01 16 24 H 0.08 1.32 7.67 -51.93 -0.40 0.92 16 25 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 26 H 0.02 0.27 7.92 -51.93 -0.41 -0.14 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.94 6.80 -51.93 -0.35 0.59 16 29 H 0.07 1.48 7.57 -51.93 -0.39 1.08 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.32 7.48 8.06 -39.29 -0.32 7.16 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.02 0.43 6.93 -51.92 -0.36 0.07 16 34 H 0.06 1.25 7.17 -51.93 -0.37 0.88 16 LS Contribution 270.35 15.07 4.07 4.07 Total: -1.00 -28.59 270.35 -7.89 -36.48 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.46 Total: 3.80 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.67 Total: -9.52 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.81 Total: -51.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.59 -7.89 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.131 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds