Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99673 * 2 1 4 4 N 1.46904 * 109.47135 * 124.99631 * 3 2 1 5 5 C 1.48065 * 111.00021 * 293.95876 * 4 3 2 6 6 C 1.53695 * 112.46659 * 192.19337 * 5 4 3 7 7 C 1.50808 * 112.09513 * 318.55510 * 6 5 4 8 8 N 1.47904 * 108.49446 * 92.56112 * 7 6 5 9 9 C 1.40021 * 114.06852 * 280.05700 * 8 7 6 10 10 H 1.09000 * 108.95735 * 301.21897 * 9 8 7 11 11 C 1.50706 * 108.95684 * 182.47194 * 9 8 7 12 12 H 1.07998 * 119.99629 * 239.99728 * 11 9 8 13 13 C 1.37875 * 119.99955 * 60.00299 * 11 9 8 14 14 N 1.31515 * 119.99932 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99908 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47233 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47364 * 119.99503 * 15 13 11 18 18 H 1.48500 * 109.46997 * 239.99827 * 15 13 11 19 19 C 1.44569 * 110.99714 * 166.25720 * 4 3 2 20 20 H 1.08004 * 119.99573 * 180.02562 * 1 2 3 21 21 H 1.07994 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.00368 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.47139 * 5.00180 * 3 2 1 24 24 H 1.08995 * 109.47471 * 244.99801 * 3 2 1 25 25 H 1.08992 * 108.89020 * 71.42147 * 5 4 3 26 26 H 1.09001 * 108.88215 * 312.95973 * 5 4 3 27 27 H 1.08999 * 108.96284 * 197.88162 * 6 5 4 28 28 H 1.09005 * 108.95560 * 79.22606 * 6 5 4 29 29 H 1.08995 * 109.63301 * 332.85472 * 7 6 5 30 30 H 1.09001 * 109.79725 * 212.35733 * 7 6 5 31 31 H 1.00903 * 111.00411 * 46.34578 * 8 7 6 32 32 H 0.97003 * 119.99476 * 180.02562 * 14 13 11 33 33 H 1.09007 * 109.57299 * 100.53962 * 19 4 3 34 34 H 1.08995 * 109.57444 * 340.16420 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9962 1.3321 1.1346 5 6 2.2653 1.3472 2.4222 6 6 3.1800 1.6750 3.6130 7 6 4.5126 0.9760 3.5139 8 7 5.4669 1.8793 2.8350 9 6 5.3398 1.9007 1.4407 10 1 5.4889 0.8917 1.0561 11 6 6.3998 2.8049 0.8663 12 1 6.1150 3.6694 0.2851 13 6 7.7331 2.5283 1.0826 14 7 8.0798 1.4756 1.7906 15 14 9.0470 3.6486 0.3699 16 1 8.4004 4.7543 -0.3814 17 1 9.8679 4.2121 1.4717 18 1 9.9172 2.8699 -0.5475 19 6 3.9535 2.4061 0.9928 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5400 0.9352 0.0004 22 1 1.8501 -0.9352 -0.0004 23 1 1.3584 2.1317 0.0896 24 1 2.6213 1.4027 -0.9313 25 1 1.8139 0.3683 2.5832 26 1 1.4734 2.0944 2.3695 27 1 2.6861 1.3666 4.5344 28 1 3.3466 2.7518 3.6457 29 1 4.4027 0.0582 2.9363 30 1 4.8801 0.7385 4.5122 31 1 5.4165 2.8119 3.2169 32 1 9.0179 1.2813 1.9431 33 1 3.6529 3.2480 1.6165 34 1 3.9987 2.7197 -0.0501 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = 16.150907 kcal Electronic energy + Delta-G solvation = -14471.405580 eV Core-core repulsion = 12211.104488 eV Total energy + Delta-G solvation = -2260.301091 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.21175 -36.96610 -34.83443 -33.68000 -32.76627 -28.79841 -27.04103 -26.31238 -24.36587 -22.04506 -20.73684 -20.48729 -18.73400 -17.13817 -16.54703 -16.28311 -15.82854 -15.45707 -15.27090 -14.92556 -14.21107 -14.10897 -13.50685 -13.03128 -13.00319 -12.88377 -12.77156 -12.44794 -12.28444 -11.89430 -11.82146 -11.61967 -11.43056 -10.78755 -10.48546 -10.28532 -9.11366 -8.32810 -7.89020 -6.13559 1.37752 1.44677 1.46673 1.56914 2.49834 3.13033 3.30232 3.92081 4.04232 4.11910 4.15288 4.20730 4.43980 4.50503 4.55792 4.67566 4.76020 4.85512 4.96057 5.02135 5.09534 5.11113 5.17953 5.43582 5.60028 5.73178 5.79921 5.80898 6.28469 6.33874 6.39442 6.84826 7.29091 7.48719 7.64193 9.12120 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041419 B = 0.008726 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.851452 B = 3208.085113 C = 3607.646655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.085 3.915 4 N -0.560 5.560 5 C 0.073 3.927 6 C -0.144 4.144 7 C 0.075 3.925 8 N -0.672 5.672 9 C 0.250 3.750 10 H -0.005 1.005 11 C -0.555 4.555 12 H 0.047 0.953 13 C 0.035 3.965 14 N -0.882 5.882 15 Si 0.947 3.053 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.284 1.284 19 C 0.047 3.953 20 H 0.115 0.885 21 H 0.100 0.900 22 H 0.105 0.895 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.320 0.680 32 H 0.253 0.747 33 H 0.022 0.978 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 -0.427 0.440 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.171 4.171 3 C -0.042 4.042 4 N -0.284 5.284 5 C -0.054 4.054 6 C -0.184 4.184 7 C -0.054 4.054 8 N -0.301 5.301 9 C 0.138 3.862 10 H 0.013 0.987 11 C -0.594 4.594 12 H 0.066 0.934 13 C -0.168 4.168 14 N -0.518 5.518 15 Si 0.773 3.227 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.210 1.210 19 C -0.084 4.084 20 H 0.133 0.867 21 H 0.118 0.882 22 H 0.123 0.877 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.209 -1.411 0.486 12.300 hybrid contribution -0.201 1.679 -0.505 1.765 sum -12.410 0.268 -0.019 12.413 Atomic orbital electron populations 1.23969 0.95038 1.02743 1.00060 1.22845 0.96049 0.97808 1.00382 1.21302 0.93897 0.95342 0.93703 1.60789 1.17493 1.47699 1.02465 1.22302 0.94257 1.00736 0.88110 1.22169 0.97754 1.00159 0.98314 1.21574 0.89411 0.96466 0.97989 1.57954 1.53504 1.12578 1.06041 1.17734 0.88561 0.94446 0.85420 0.98674 1.21478 0.91980 1.11717 1.34262 0.93443 1.25666 1.00401 0.96058 0.94723 1.70271 1.16150 1.27120 1.38241 0.85711 0.79537 0.79290 0.78124 1.19397 1.20766 1.21009 1.22802 0.95026 0.91040 0.99537 0.86680 0.88164 0.87690 0.94423 0.91180 0.90593 0.95047 0.89230 0.93257 0.93167 0.92120 0.86069 0.93773 0.95931 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 14.32 67.78 0.97 -2.72 16 2 C -0.15 -3.96 8.83 25.64 0.23 -3.74 16 3 C 0.08 2.60 5.31 85.56 0.45 3.05 16 4 N -0.56 -20.43 3.93 -899.78 -3.53 -23.97 16 5 C 0.07 2.26 5.07 86.31 0.44 2.69 16 6 C -0.14 -4.57 5.35 30.12 0.16 -4.41 16 7 C 0.07 2.96 6.28 85.40 0.54 3.49 16 8 N -0.67 -32.54 5.31 -508.96 -2.70 -35.24 16 9 C 0.25 12.86 2.01 45.82 0.09 12.95 16 10 H 0.00 -0.28 8.07 -2.39 -0.02 -0.30 16 11 C -0.56 -31.12 8.50 25.60 0.22 -30.90 16 12 H 0.05 2.61 7.71 -2.91 -0.02 2.59 16 13 C 0.03 1.97 5.38 84.65 0.46 2.42 16 14 N -0.88 -52.84 12.74 21.45 0.27 -52.56 16 15 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 C 0.05 1.99 4.75 87.15 0.41 2.41 16 20 H 0.12 1.91 8.06 -2.91 -0.02 1.89 16 21 H 0.10 1.87 7.84 -2.91 -0.02 1.85 16 22 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 23 H 0.04 1.07 7.63 -2.38 -0.02 1.05 16 24 H 0.07 2.27 7.67 -2.39 -0.02 2.25 16 25 H 0.08 2.18 7.66 -2.39 -0.02 2.17 16 26 H 0.03 0.90 7.92 -2.39 -0.02 0.88 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 1.62 6.80 -2.38 -0.02 1.61 16 29 H 0.05 2.16 7.57 -2.39 -0.02 2.15 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.32 15.15 8.06 -89.69 -0.72 14.42 16 32 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.02 0.94 6.93 -2.38 -0.02 0.92 16 34 H 0.05 2.16 7.17 -2.39 -0.02 2.15 16 Total: -1.00 -62.03 270.35 0.37 -61.67 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.34 Total: 18.50 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 3.96 Total: -14.75 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -5.96 Total: -111.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.03 0.37 -61.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.818 kcal (2) G-P(sol) polarization free energy of solvation -62.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds