Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46901 * 109.47213 * 124.99711 * 3 2 1 5 5 C 1.40091 * 110.99514 * 66.05011 * 4 3 2 6 6 C 1.54508 * 111.50609 * 188.14888 * 5 4 3 7 7 C 1.50748 * 108.94699 * 283.98888 * 6 5 4 8 8 N 1.48069 * 112.93723 * 92.64727 * 7 6 5 9 9 C 1.47745 * 113.79041 * 318.29510 * 8 7 6 10 10 H 1.08996 * 108.99878 * 79.49565 * 9 8 7 11 11 C 1.50695 * 108.99246 * 198.24541 * 9 8 7 12 12 H 1.08006 * 120.00325 * 119.99380 * 11 9 8 13 13 C 1.37875 * 119.99970 * 299.99570 * 11 9 8 14 14 N 1.31511 * 120.00168 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00216 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47088 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47176 * 120.00006 * 15 13 11 18 18 H 1.48498 * 109.47499 * 239.99955 * 15 13 11 19 19 C 1.47683 * 111.00229 * 194.68865 * 4 3 2 20 20 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 22 22 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 24 24 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 25 25 H 1.09001 * 109.07304 * 308.67035 * 5 4 3 26 26 H 1.08999 * 109.06909 * 67.63091 * 5 4 3 27 27 H 1.09000 * 109.56295 * 43.83139 * 6 5 4 28 28 H 1.09003 * 109.55752 * 164.15175 * 6 5 4 29 29 H 1.08990 * 108.79492 * 213.54654 * 7 6 5 30 30 H 1.09008 * 108.78430 * 331.88001 * 7 6 5 31 31 H 1.00899 * 110.99488 * 84.35223 * 8 7 6 32 32 H 0.96998 * 120.00354 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.73966 * 271.64519 * 19 4 3 34 34 H 1.09006 * 109.73567 * 32.34297 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 4.0005 0.3673 0.9817 6 6 4.8673 0.2452 2.2549 7 6 5.8091 1.4205 2.3204 8 7 5.2633 2.5546 3.1003 9 6 3.8329 2.8209 2.8436 10 1 3.2324 2.1068 3.4070 11 6 3.5017 4.2144 3.3119 12 1 3.1253 4.9446 2.6107 13 6 3.6793 4.5573 4.6355 14 7 4.1382 3.6684 5.4892 15 14 3.2695 6.2849 5.2159 16 1 2.7747 7.0881 4.0690 17 1 2.2188 6.2190 6.2633 18 1 4.4884 6.9209 5.7770 19 6 3.4923 2.7013 1.3797 20 1 -0.5401 0.9353 -0.0004 21 1 -0.5400 -0.9354 -0.0045 22 1 1.8500 -0.9353 -0.0004 23 1 2.6212 1.4027 -0.9314 24 1 1.3585 2.1317 0.0896 25 1 3.5387 -0.5974 0.7713 26 1 4.6377 0.6465 0.1425 27 1 4.2245 0.2433 3.1352 28 1 5.4412 -0.6807 2.2182 29 1 6.7434 1.0965 2.7787 30 1 6.0160 1.7615 1.3059 31 1 5.4368 2.4318 4.0867 32 1 4.2634 3.9097 6.4203 33 1 4.3829 2.8833 0.7784 34 1 2.7188 3.4246 1.1214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218966658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = 34.335099 kcal Electronic energy + Delta-G solvation = -14481.951403 eV Core-core repulsion = 12222.438837 eV Total energy + Delta-G solvation = -2259.512565 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.85579 -35.26952 -33.11582 -32.30195 -30.74128 -27.40067 -25.39458 -24.90525 -22.70055 -20.48517 -19.36373 -18.73804 -16.66130 -15.46860 -15.02609 -14.96374 -14.35611 -14.27943 -13.86700 -12.78576 -12.77297 -12.46110 -11.96225 -11.70292 -11.35367 -11.22965 -10.89292 -10.84761 -10.42670 -10.30761 -10.24849 -9.92673 -9.53380 -9.27712 -9.04662 -8.43801 -7.55637 -6.66772 -5.99046 -3.99278 2.44886 3.34541 3.42291 3.46023 4.45072 4.64832 5.08407 5.24585 5.32551 5.43334 5.57755 5.68898 5.79998 5.91885 5.99656 6.03653 6.16072 6.31311 6.37651 6.52076 6.57029 6.62686 6.75972 6.93243 6.95026 6.99060 7.50605 7.83416 7.93930 8.07505 8.35474 8.76358 9.13258 9.17248 9.66990 11.13028 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032564 B = 0.009610 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.639875 B = 2912.993520 C = 3485.607801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C 0.085 3.915 4 N -0.553 5.553 5 C 0.081 3.919 6 C -0.150 4.150 7 C 0.055 3.945 8 N -0.688 5.688 9 C 0.221 3.779 10 H 0.015 0.985 11 C -0.501 4.501 12 H 0.056 0.944 13 C 0.070 3.930 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.077 3.923 20 H 0.096 0.904 21 H 0.093 0.907 22 H 0.104 0.896 23 H 0.034 0.966 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.010 0.990 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.356 0.644 32 H 0.260 0.740 33 H 0.032 0.968 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -6.460 -8.361 10.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.158 4.158 3 C -0.042 4.042 4 N -0.277 5.277 5 C -0.049 4.049 6 C -0.190 4.190 7 C -0.076 4.076 8 N -0.324 5.324 9 C 0.113 3.887 10 H 0.033 0.967 11 C -0.541 4.541 12 H 0.075 0.925 13 C -0.132 4.132 14 N -0.536 5.536 15 Si 0.723 3.277 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.049 4.049 20 H 0.114 0.886 21 H 0.112 0.888 22 H 0.122 0.878 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.178 0.822 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.056 -6.139 -8.236 10.476 hybrid contribution -0.072 0.257 0.212 0.341 sum -2.127 -5.882 -8.024 10.174 Atomic orbital electron populations 1.23739 0.95823 1.01529 1.02030 1.22933 0.95927 0.98327 0.98577 1.21206 0.95297 0.95725 0.91995 1.59126 1.20026 1.08100 1.40435 1.20963 0.92406 0.95218 0.96291 1.22170 0.98886 0.99224 0.98671 1.21795 0.96267 0.90408 0.99102 1.60921 1.20761 1.36807 1.13880 1.18763 0.84634 0.96094 0.89166 0.96717 1.21231 1.42128 0.96935 0.93760 0.92531 1.24940 0.94530 0.97007 0.96732 1.69727 1.46439 1.33793 1.03608 0.86505 0.77801 0.84827 0.78536 1.19902 1.21263 1.21080 1.22145 0.97638 0.85447 0.99694 0.88581 0.88847 0.87810 0.94845 0.90422 0.92279 0.97223 0.90733 0.92613 0.93615 0.93616 0.82177 0.92984 0.94975 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 14.32 29.02 0.42 -2.01 16 2 C -0.14 -1.94 9.14 -36.02 -0.33 -2.27 16 3 C 0.08 1.34 5.41 -4.97 -0.03 1.31 16 4 N -0.55 -10.51 3.98 -241.14 -0.96 -11.47 16 5 C 0.08 1.40 4.83 -6.55 -0.03 1.37 16 6 C -0.15 -2.74 5.68 -27.07 -0.15 -2.90 16 7 C 0.05 1.10 6.01 -4.31 -0.03 1.07 16 8 N -0.69 -16.89 6.40 -108.88 -0.70 -17.59 16 9 C 0.22 5.61 1.97 -69.52 -0.14 5.48 16 10 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 11 C -0.50 -13.94 8.60 -34.44 -0.30 -14.23 16 12 H 0.06 1.55 7.46 -52.48 -0.39 1.16 16 13 C 0.07 1.94 5.38 -17.82 -0.10 1.84 16 14 N -0.90 -25.55 11.65 55.43 0.65 -24.90 16 15 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.08 1.67 4.88 -4.51 -0.02 1.64 16 20 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 21 H 0.09 1.00 8.06 -52.48 -0.42 0.58 16 22 H 0.10 1.36 6.78 -52.49 -0.36 1.00 16 23 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 24 H 0.08 1.22 7.33 -51.93 -0.38 0.84 16 25 H 0.06 0.92 6.16 -51.93 -0.32 0.60 16 26 H 0.01 0.17 7.59 -51.93 -0.39 -0.23 16 27 H 0.07 1.57 7.19 -51.93 -0.37 1.20 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.91 6.52 -51.92 -0.34 0.57 16 31 H 0.36 9.40 7.15 -39.29 -0.28 9.12 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.03 0.70 6.77 -51.93 -0.35 0.35 16 34 H 0.07 1.52 6.92 -51.93 -0.36 1.16 16 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -28.37 264.75 -7.90 -36.27 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.15 Total: 5.85 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.70 Total: -8.68 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -1.01 Total: -53.96 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.37 -7.90 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.610 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds