Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46901 * 109.47213 * 124.99711 * 3 2 1 5 5 C 1.40091 * 110.99514 * 66.05011 * 4 3 2 6 6 C 1.54508 * 111.50609 * 188.14888 * 5 4 3 7 7 C 1.50748 * 108.94699 * 283.98888 * 6 5 4 8 8 N 1.48069 * 112.93723 * 92.64727 * 7 6 5 9 9 C 1.47745 * 113.79041 * 318.29510 * 8 7 6 10 10 H 1.08996 * 108.99878 * 79.49565 * 9 8 7 11 11 C 1.50695 * 108.99246 * 198.24541 * 9 8 7 12 12 H 1.08006 * 120.00325 * 119.99380 * 11 9 8 13 13 C 1.37875 * 119.99970 * 299.99570 * 11 9 8 14 14 N 1.31511 * 120.00168 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00216 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47088 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47176 * 120.00006 * 15 13 11 18 18 H 1.48498 * 109.47499 * 239.99955 * 15 13 11 19 19 C 1.47683 * 111.00229 * 194.68865 * 4 3 2 20 20 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 22 22 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 24 24 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 25 25 H 1.09001 * 109.07304 * 308.67035 * 5 4 3 26 26 H 1.08999 * 109.06909 * 67.63091 * 5 4 3 27 27 H 1.09000 * 109.56295 * 43.83139 * 6 5 4 28 28 H 1.09003 * 109.55752 * 164.15175 * 6 5 4 29 29 H 1.08990 * 108.79492 * 213.54654 * 7 6 5 30 30 H 1.09008 * 108.78430 * 331.88001 * 7 6 5 31 31 H 1.00899 * 110.99488 * 84.35223 * 8 7 6 32 32 H 0.96998 * 120.00354 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.73966 * 271.64519 * 19 4 3 34 34 H 1.09006 * 109.73567 * 32.34297 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 4.0005 0.3673 0.9817 6 6 4.8673 0.2452 2.2549 7 6 5.8091 1.4205 2.3204 8 7 5.2633 2.5546 3.1003 9 6 3.8329 2.8209 2.8436 10 1 3.2324 2.1068 3.4070 11 6 3.5017 4.2144 3.3119 12 1 3.1253 4.9446 2.6107 13 6 3.6793 4.5573 4.6355 14 7 4.1382 3.6684 5.4892 15 14 3.2695 6.2849 5.2159 16 1 2.7747 7.0881 4.0690 17 1 2.2188 6.2190 6.2633 18 1 4.4884 6.9209 5.7770 19 6 3.4923 2.7013 1.3797 20 1 -0.5401 0.9353 -0.0004 21 1 -0.5400 -0.9354 -0.0045 22 1 1.8500 -0.9353 -0.0004 23 1 2.6212 1.4027 -0.9314 24 1 1.3585 2.1317 0.0896 25 1 3.5387 -0.5974 0.7713 26 1 4.6377 0.6465 0.1425 27 1 4.2245 0.2433 3.1352 28 1 5.4412 -0.6807 2.2182 29 1 6.7434 1.0965 2.7787 30 1 6.0160 1.7615 1.3059 31 1 5.4368 2.4318 4.0867 32 1 4.2634 3.9097 6.4203 33 1 4.3829 2.8833 0.7784 34 1 2.7188 3.4246 1.1214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = 14.537538 kcal Electronic energy + Delta-G solvation = -14482.809890 eV Core-core repulsion = 12222.438837 eV Total energy + Delta-G solvation = -2260.371052 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39684 -36.82083 -34.87610 -33.71783 -32.60120 -29.02781 -27.19708 -26.43685 -24.39702 -21.94367 -20.79411 -20.30188 -18.57239 -17.09886 -16.63575 -16.48966 -16.06130 -15.85749 -15.45101 -14.37565 -14.20287 -13.87715 -13.63461 -13.50527 -12.98340 -12.78802 -12.61335 -12.47689 -12.10924 -11.98304 -11.78821 -11.60476 -11.36639 -10.96058 -10.54634 -10.30981 -9.01397 -8.60111 -8.09961 -6.18264 1.40752 1.43314 1.45278 1.56292 2.46565 3.14403 3.22089 3.87219 4.00902 4.04402 4.15618 4.30670 4.39098 4.48581 4.63341 4.67521 4.70599 4.83178 4.92616 4.96978 5.05593 5.08517 5.14666 5.39688 5.55874 5.73358 5.82575 5.91531 6.25654 6.33569 6.54360 6.74074 7.09421 7.19772 7.52151 9.00746 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032564 B = 0.009610 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.639875 B = 2912.993520 C = 3485.607801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 C 0.085 3.915 4 N -0.567 5.567 5 C 0.080 3.920 6 C -0.143 4.143 7 C 0.054 3.946 8 N -0.703 5.703 9 C 0.229 3.771 10 H -0.026 1.026 11 C -0.527 4.527 12 H 0.053 0.947 13 C 0.022 3.978 14 N -0.919 5.919 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.089 3.911 20 H 0.096 0.904 21 H 0.115 0.885 22 H 0.115 0.885 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.019 0.981 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.342 0.658 32 H 0.262 0.738 33 H 0.029 0.971 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -7.045 -9.428 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.176 4.176 3 C -0.041 4.041 4 N -0.291 5.291 5 C -0.049 4.049 6 C -0.183 4.183 7 C -0.076 4.076 8 N -0.337 5.337 9 C 0.121 3.879 10 H -0.009 1.009 11 C -0.566 4.566 12 H 0.071 0.929 13 C -0.177 4.177 14 N -0.560 5.560 15 Si 0.785 3.215 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.037 4.037 20 H 0.115 0.885 21 H 0.133 0.867 22 H 0.133 0.867 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.161 0.839 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.358 -6.738 -9.333 11.750 hybrid contribution 0.004 0.389 0.530 0.657 sum -2.354 -6.349 -8.803 11.106 Atomic orbital electron populations 1.23976 0.95521 1.02664 0.99696 1.22896 0.96389 0.97637 1.00654 1.21249 0.94759 0.96913 0.91191 1.59038 1.20881 1.06659 1.42564 1.21031 0.92266 0.95857 0.95743 1.22092 0.98416 0.99839 0.97944 1.21867 0.97103 0.89962 0.98636 1.60810 1.20098 1.39527 1.13221 1.18581 0.84603 0.93873 0.90806 1.00882 1.21612 1.42588 0.98142 0.94278 0.92859 1.25706 0.94444 1.00712 0.96888 1.69847 1.46944 1.35415 1.03768 0.85503 0.77570 0.80350 0.78056 1.19282 1.20815 1.20763 1.21822 0.97354 0.87453 0.97117 0.88535 0.86661 0.86704 0.93711 0.91023 0.89794 0.96337 0.94021 0.89231 0.92065 0.93114 0.83851 0.92927 0.95253 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.08 14.32 67.79 0.97 -3.11 16 2 C -0.16 -4.02 9.14 25.65 0.23 -3.78 16 3 C 0.09 2.57 5.41 85.56 0.46 3.03 16 4 N -0.57 -21.12 3.98 -916.85 -3.65 -24.77 16 5 C 0.08 2.62 4.83 88.05 0.43 3.05 16 6 C -0.14 -5.07 5.68 30.38 0.17 -4.90 16 7 C 0.05 2.13 6.01 85.35 0.51 2.64 16 8 N -0.70 -35.08 6.40 -498.40 -3.19 -38.27 16 9 C 0.23 11.95 1.97 43.28 0.09 12.04 16 10 H -0.03 -1.57 7.20 -2.39 -0.02 -1.59 16 11 C -0.53 -29.91 8.60 25.60 0.22 -29.69 16 12 H 0.05 2.97 7.46 -2.91 -0.02 2.95 16 13 C 0.02 1.23 5.38 84.65 0.46 1.68 16 14 N -0.92 -53.50 11.65 21.45 0.25 -53.25 16 15 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C 0.09 3.91 4.88 85.43 0.42 4.32 16 20 H 0.10 2.15 7.84 -2.91 -0.02 2.13 16 21 H 0.12 2.10 8.06 -2.91 -0.02 2.07 16 22 H 0.12 2.66 6.78 -2.91 -0.02 2.64 16 23 H 0.04 1.24 8.11 -2.39 -0.02 1.22 16 24 H 0.07 2.20 7.33 -2.38 -0.02 2.18 16 25 H 0.08 2.35 6.16 -2.39 -0.01 2.34 16 26 H 0.02 0.59 7.59 -2.39 -0.02 0.57 16 27 H 0.04 1.76 7.19 -2.39 -0.02 1.74 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.95 6.52 -2.38 -0.02 1.93 16 31 H 0.34 18.55 7.15 -89.69 -0.64 17.90 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.03 1.28 6.77 -2.39 -0.02 1.26 16 34 H 0.07 2.87 6.92 -2.38 -0.02 2.85 16 Total: -1.00 -61.34 264.75 -0.18 -61.52 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.43 Total: 22.87 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 3.96 Total: -14.71 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -6.59 Total: -116.29 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -61.34 -0.18 -61.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.060 kcal (2) G-P(sol) polarization free energy of solvation -61.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds