Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00067 * 2 1 4 4 N 1.46899 * 109.47184 * 125.12986 * 3 2 1 5 5 C 1.44185 * 110.99875 * 301.56634 * 4 3 2 6 6 C 1.54320 * 112.61823 * 217.52622 * 5 4 3 7 7 C 1.54313 * 111.72350 * 318.91762 * 6 5 4 8 8 N 1.44172 * 112.61511 * 318.92331 * 7 6 5 9 9 C 1.48079 * 109.90068 * 94.35269 * 8 7 6 10 10 C 1.46094 * 112.15975 * 279.63888 * 9 8 7 11 11 H 1.09004 * 108.94380 * 300.08549 * 10 9 8 12 12 C 1.50697 * 108.94777 * 181.37080 * 10 9 8 13 13 H 1.07996 * 119.99911 * 274.28819 * 12 10 9 14 14 C 1.37881 * 119.99924 * 94.28698 * 12 10 9 15 15 N 1.31514 * 119.99920 * 3.97149 * 14 12 10 16 16 Si 1.86803 * 119.99678 * 183.97282 * 14 12 10 17 17 H 1.48504 * 109.46961 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47027 * 299.99331 * 16 14 12 19 19 H 1.48497 * 109.47217 * 59.99888 * 16 14 12 20 20 H 1.08000 * 120.00409 * 180.02562 * 1 2 3 21 21 H 1.08008 * 119.99758 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00199 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47260 * 5.12460 * 3 2 1 24 24 H 1.08999 * 109.46835 * 245.12595 * 3 2 1 25 25 H 1.09000 * 108.84916 * 96.71829 * 5 4 3 26 26 H 1.09008 * 108.76992 * 338.28021 * 5 4 3 27 27 H 1.08998 * 109.03239 * 198.33564 * 6 5 4 28 28 H 1.09005 * 109.03140 * 79.49598 * 6 5 4 29 29 H 1.09003 * 108.85485 * 198.10983 * 7 6 5 30 30 H 1.09006 * 108.77261 * 79.67893 * 7 6 5 31 31 H 1.00901 * 111.00237 * 217.53041 * 8 7 6 32 32 H 1.08998 * 108.94523 * 158.94997 * 9 8 7 33 33 H 1.09003 * 108.87131 * 40.27546 * 9 8 7 34 34 H 0.96996 * 120.00217 * 354.31867 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9985 1.3307 1.1327 5 6 2.2999 1.1658 2.3832 6 6 2.8967 2.0288 3.5147 7 6 4.4394 2.0291 3.4798 8 7 4.9877 0.7270 3.1926 9 6 5.2463 0.5981 1.7403 10 6 4.0332 0.2809 0.9906 11 1 3.6293 -0.6639 1.3545 12 6 4.3837 0.1334 -0.4676 13 1 4.4185 1.0043 -1.1053 14 6 4.6599 -1.1133 -0.9876 15 7 4.5415 -2.1824 -0.2309 16 14 5.2021 -1.2839 -2.7671 17 1 5.4356 -2.7170 -3.0782 18 1 4.1435 -0.7491 -3.6605 19 1 6.4589 -0.5212 -2.9768 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3588 2.1315 0.0918 24 1 2.6195 1.4036 -0.9323 25 1 2.3474 0.1173 2.6775 26 1 1.2557 1.4443 2.2410 27 1 2.5630 1.6360 4.4751 28 1 2.5386 3.0528 3.4074 29 1 4.8136 2.3634 4.4475 30 1 4.7728 2.7287 2.7132 31 1 5.8287 0.5632 3.7256 32 1 5.9784 -0.1933 1.5801 33 1 5.6552 1.5384 1.3702 34 1 4.3405 -2.0884 0.7134 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218966808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = 33.812555 kcal Electronic energy + Delta-G solvation = -14941.113883 eV Core-core repulsion = 12681.578659 eV Total energy + Delta-G solvation = -2259.535225 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.66212 -35.25741 -33.50753 -32.00674 -30.82348 -27.24511 -25.82793 -23.41812 -23.20604 -20.25232 -19.56446 -18.52217 -16.77901 -15.83962 -15.03404 -14.39775 -14.09343 -13.98856 -13.74104 -13.53038 -12.59107 -12.22917 -12.03527 -11.50844 -11.06529 -10.90061 -10.81386 -10.61589 -10.46171 -10.15812 -10.10282 -9.97932 -9.69621 -8.79938 -8.51916 -8.32054 -7.74938 -7.17311 -6.38771 -4.13288 3.00515 3.41099 3.41584 3.60419 4.46119 4.93891 5.05089 5.43897 5.49283 5.62458 5.71931 5.91872 5.96309 6.17486 6.24020 6.25470 6.41769 6.46842 6.55834 6.66520 6.70906 6.75317 6.85869 7.14948 7.39833 7.46904 7.50758 7.70987 7.97411 8.05408 8.15363 8.47755 8.59696 8.84351 9.59195 10.96895 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.013788 C = 0.010331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.977245 B = 2030.227877 C = 2709.717442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.138 4.138 3 C 0.096 3.904 4 N -0.528 5.528 5 C 0.068 3.932 6 C -0.102 4.102 7 C 0.074 3.926 8 N -0.696 5.696 9 C 0.084 3.916 10 C 0.194 3.806 11 H 0.022 0.978 12 C -0.593 4.593 13 H 0.056 0.944 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 1.064 2.936 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.288 1.288 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.115 0.885 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.327 0.673 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 6.017 3.705 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.157 4.157 3 C -0.031 4.031 4 N -0.251 5.251 5 C -0.062 4.062 6 C -0.141 4.141 7 C -0.057 4.057 8 N -0.325 5.325 9 C -0.044 4.044 10 C 0.088 3.912 11 H 0.040 0.960 12 C -0.633 4.633 13 H 0.074 0.926 14 C -0.180 4.180 15 N -0.545 5.545 16 Si 0.892 3.108 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.214 1.214 20 H 0.102 0.898 21 H 0.103 0.897 22 H 0.133 0.867 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.144 0.856 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.388 5.062 2.531 6.143 hybrid contribution -0.024 0.844 1.120 1.402 sum -2.412 5.906 3.651 7.351 Atomic orbital electron populations 1.23601 0.96090 1.00339 1.07070 1.23970 0.95779 1.01751 0.94239 1.21255 0.93042 0.91788 0.97019 1.61840 1.12948 1.50336 0.99948 1.21623 0.95414 0.98199 0.90970 1.21993 0.95552 0.98963 0.97585 1.21450 0.95388 0.90480 0.98380 1.60039 1.33050 1.30512 1.08947 1.21242 0.99611 0.99449 0.84099 1.18467 0.88396 0.88904 0.95451 0.95989 1.21904 1.51680 0.95829 0.93867 0.92603 1.25763 0.94179 0.92044 1.06026 1.70807 1.44792 1.30668 1.08267 0.83612 0.76538 0.76069 0.74586 1.20873 1.21387 1.21407 0.89761 0.89683 0.86701 0.93377 0.88310 0.94763 0.93890 0.93064 0.92979 0.94053 0.94406 0.85646 0.92164 0.95524 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.20 14.32 29.02 0.42 -3.78 16 2 C -0.14 -2.90 7.75 -36.03 -0.28 -3.18 16 3 C 0.10 2.02 5.13 -4.98 -0.03 1.99 16 4 N -0.53 -11.50 4.43 -233.84 -1.03 -12.53 16 5 C 0.07 1.34 4.43 -4.58 -0.02 1.32 16 6 C -0.10 -1.74 6.42 -25.35 -0.16 -1.90 16 7 C 0.07 1.28 6.00 -4.59 -0.03 1.25 16 8 N -0.70 -13.34 6.44 -117.73 -0.76 -14.10 16 9 C 0.08 1.89 5.22 -6.45 -0.03 1.86 16 10 C 0.19 4.70 1.14 -71.49 -0.08 4.62 16 11 H 0.02 0.61 4.95 -51.93 -0.26 0.35 16 12 C -0.59 -15.49 6.01 -34.44 -0.21 -15.70 16 13 H 0.06 1.49 6.84 -52.49 -0.36 1.13 16 14 C 0.03 0.68 5.46 -17.82 -0.10 0.58 16 15 N -0.91 -26.15 13.62 55.43 0.76 -25.40 16 16 Si 1.06 24.32 29.91 -169.99 -5.08 19.23 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H 0.08 1.43 8.06 -52.49 -0.42 1.00 16 21 H 0.08 1.37 7.84 -52.48 -0.41 0.96 16 22 H 0.12 2.84 7.26 -52.49 -0.38 2.46 16 23 H 0.05 0.91 7.73 -51.93 -0.40 0.51 16 24 H 0.10 2.24 5.91 -51.93 -0.31 1.93 16 25 H 0.03 0.76 7.16 -51.93 -0.37 0.39 16 26 H 0.04 0.80 7.37 -51.92 -0.38 0.42 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.71 7.16 -51.93 -0.37 0.34 16 31 H 0.33 5.47 8.89 -39.29 -0.35 5.12 16 32 H 0.06 1.44 8.12 -51.93 -0.42 1.01 16 33 H 0.03 0.61 7.36 -51.93 -0.38 0.23 16 34 H 0.27 7.93 6.45 -40.82 -0.26 7.67 16 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -27.50 263.12 -7.82 -35.32 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.15 Total: 6.44 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.52 Total: -12.93 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -1.04 Total: -52.03 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.50 -7.82 -35.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.134 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds