Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00067 * 2 1 4 4 N 1.46899 * 109.47184 * 125.12986 * 3 2 1 5 5 C 1.44185 * 110.99875 * 301.56634 * 4 3 2 6 6 C 1.54320 * 112.61823 * 217.52622 * 5 4 3 7 7 C 1.54313 * 111.72350 * 318.91762 * 6 5 4 8 8 N 1.44172 * 112.61511 * 318.92331 * 7 6 5 9 9 C 1.48079 * 109.90068 * 94.35269 * 8 7 6 10 10 C 1.46094 * 112.15975 * 279.63888 * 9 8 7 11 11 H 1.09004 * 108.94380 * 300.08549 * 10 9 8 12 12 C 1.50697 * 108.94777 * 181.37080 * 10 9 8 13 13 H 1.07996 * 119.99911 * 274.28819 * 12 10 9 14 14 C 1.37881 * 119.99924 * 94.28698 * 12 10 9 15 15 N 1.31514 * 119.99920 * 3.97149 * 14 12 10 16 16 Si 1.86803 * 119.99678 * 183.97282 * 14 12 10 17 17 H 1.48504 * 109.46961 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47027 * 299.99331 * 16 14 12 19 19 H 1.48497 * 109.47217 * 59.99888 * 16 14 12 20 20 H 1.08000 * 120.00409 * 180.02562 * 1 2 3 21 21 H 1.08008 * 119.99758 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00199 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47260 * 5.12460 * 3 2 1 24 24 H 1.08999 * 109.46835 * 245.12595 * 3 2 1 25 25 H 1.09000 * 108.84916 * 96.71829 * 5 4 3 26 26 H 1.09008 * 108.76992 * 338.28021 * 5 4 3 27 27 H 1.08998 * 109.03239 * 198.33564 * 6 5 4 28 28 H 1.09005 * 109.03140 * 79.49598 * 6 5 4 29 29 H 1.09003 * 108.85485 * 198.10983 * 7 6 5 30 30 H 1.09006 * 108.77261 * 79.67893 * 7 6 5 31 31 H 1.00901 * 111.00237 * 217.53041 * 8 7 6 32 32 H 1.08998 * 108.94523 * 158.94997 * 9 8 7 33 33 H 1.09003 * 108.87131 * 40.27546 * 9 8 7 34 34 H 0.96996 * 120.00217 * 354.31867 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9985 1.3307 1.1327 5 6 2.2999 1.1658 2.3832 6 6 2.8967 2.0288 3.5147 7 6 4.4394 2.0291 3.4798 8 7 4.9877 0.7270 3.1926 9 6 5.2463 0.5981 1.7403 10 6 4.0332 0.2809 0.9906 11 1 3.6293 -0.6639 1.3545 12 6 4.3837 0.1334 -0.4676 13 1 4.4185 1.0043 -1.1053 14 6 4.6599 -1.1133 -0.9876 15 7 4.5415 -2.1824 -0.2309 16 14 5.2021 -1.2839 -2.7671 17 1 5.4356 -2.7170 -3.0782 18 1 4.1435 -0.7491 -3.6605 19 1 6.4589 -0.5212 -2.9768 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3588 2.1315 0.0918 24 1 2.6195 1.4036 -0.9323 25 1 2.3474 0.1173 2.6775 26 1 1.2557 1.4443 2.2410 27 1 2.5630 1.6360 4.4751 28 1 2.5386 3.0528 3.4074 29 1 4.8136 2.3634 4.4475 30 1 4.7728 2.7287 2.7132 31 1 5.8287 0.5632 3.7256 32 1 5.9784 -0.1933 1.5801 33 1 5.6552 1.5384 1.3702 34 1 4.3405 -2.0884 0.7134 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = 13.876396 kcal Electronic energy + Delta-G solvation = -14941.978380 eV Core-core repulsion = 12681.578659 eV Total energy + Delta-G solvation = -2260.399721 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37284 -36.85199 -35.42385 -33.60403 -32.58764 -28.94252 -27.60600 -25.14093 -24.99732 -22.02971 -21.09150 -20.20957 -18.67225 -17.53500 -16.79180 -16.08873 -15.79453 -15.57935 -15.48772 -15.16367 -14.19643 -14.03395 -13.71100 -13.18000 -12.81923 -12.59079 -12.54580 -12.33066 -12.06406 -11.95548 -11.79555 -11.57493 -11.30773 -10.65971 -10.47162 -10.14784 -9.33115 -8.95171 -8.54539 -6.28163 1.43148 1.53290 1.59527 1.78111 2.56076 3.16011 3.36267 3.58823 4.06951 4.16056 4.19037 4.32920 4.45840 4.60295 4.66908 4.71145 4.80712 4.84001 5.00197 5.06465 5.13771 5.17090 5.26682 5.32459 5.63762 5.76593 5.84639 5.95018 6.06344 6.24518 6.53793 6.58713 6.67367 6.87883 7.51707 8.80526 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.013788 C = 0.010331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.977245 B = 2030.227877 C = 2709.717442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.099 3.901 4 N -0.528 5.528 5 C 0.070 3.930 6 C -0.099 4.099 7 C 0.071 3.929 8 N -0.699 5.699 9 C 0.096 3.904 10 C 0.204 3.796 11 H -0.016 1.016 12 C -0.589 4.589 13 H 0.049 0.951 14 C -0.020 4.020 15 N -0.936 5.936 16 Si 1.105 2.895 17 H -0.289 1.289 18 H -0.273 1.273 19 H -0.271 1.271 20 H 0.095 0.905 21 H 0.117 0.883 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.002 0.998 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.343 0.657 32 H 0.036 0.964 33 H 0.021 0.979 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 7.842 4.114 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.191 4.191 3 C -0.028 4.028 4 N -0.250 5.250 5 C -0.060 4.060 6 C -0.138 4.138 7 C -0.059 4.059 8 N -0.329 5.329 9 C -0.033 4.033 10 C 0.096 3.904 11 H 0.002 0.998 12 C -0.628 4.628 13 H 0.067 0.933 14 C -0.219 4.219 15 N -0.574 5.574 16 Si 0.928 3.072 17 H -0.215 1.215 18 H -0.199 1.199 19 H -0.196 1.196 20 H 0.113 0.887 21 H 0.135 0.865 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.021 0.979 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.161 0.839 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.422 6.916 2.960 8.264 hybrid contribution 0.183 0.308 1.047 1.106 sum -3.239 7.224 4.006 8.873 Atomic orbital electron populations 1.23858 0.94778 1.02317 1.02172 1.23600 0.96810 0.99843 0.98850 1.21231 0.93151 0.92732 0.95694 1.61873 1.13199 1.48677 1.01271 1.21664 0.96408 0.97099 0.90824 1.22020 0.95142 0.99632 0.97011 1.21544 0.95705 0.88906 0.99786 1.59924 1.34049 1.32148 1.06809 1.20892 0.97984 0.98054 0.86386 1.18265 0.89517 0.88083 0.94499 0.99791 1.22086 1.50360 0.95359 0.95004 0.93281 1.26970 0.93935 0.92002 1.09012 1.70917 1.47335 1.31510 1.07657 0.83075 0.77238 0.75883 0.70984 1.21510 1.19871 1.19615 0.88658 0.86532 0.91418 0.90377 0.90724 0.97915 0.92440 0.91305 0.90787 0.90483 0.95688 0.83921 0.94583 0.96087 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.51 14.32 67.78 0.97 -5.54 16 2 C -0.17 -7.21 7.75 25.65 0.20 -7.01 16 3 C 0.10 4.10 5.13 85.56 0.44 4.54 16 4 N -0.53 -22.87 4.43 -893.74 -3.96 -26.82 16 5 C 0.07 2.68 4.43 87.26 0.39 3.06 16 6 C -0.10 -3.10 6.42 31.49 0.20 -2.90 16 7 C 0.07 2.29 6.00 87.26 0.52 2.81 16 8 N -0.70 -26.34 6.44 -526.39 -3.39 -29.73 16 9 C 0.10 4.40 5.22 83.95 0.44 4.84 16 10 C 0.20 10.16 1.14 41.82 0.05 10.21 16 11 H -0.02 -0.90 4.95 -2.39 -0.01 -0.91 16 12 C -0.59 -31.67 6.01 25.60 0.15 -31.52 16 13 H 0.05 2.67 6.84 -2.91 -0.02 2.65 16 14 C -0.02 -1.11 5.46 84.66 0.46 -0.64 16 15 N -0.94 -56.30 13.62 21.45 0.29 -56.01 16 16 Si 1.11 49.70 29.91 68.60 2.05 51.75 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 20 H 0.10 3.00 8.06 -2.91 -0.02 2.98 16 21 H 0.12 3.24 7.84 -2.91 -0.02 3.22 16 22 H 0.07 3.52 7.26 -2.91 -0.02 3.50 16 23 H 0.08 2.74 7.73 -2.39 -0.02 2.72 16 24 H 0.07 3.41 5.91 -2.39 -0.01 3.39 16 25 H 0.00 0.11 7.16 -2.39 -0.02 0.09 16 26 H 0.06 2.02 7.37 -2.38 -0.02 2.00 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.02 0.88 7.16 -2.38 -0.02 0.86 16 31 H 0.34 11.09 8.89 -89.69 -0.80 10.30 16 32 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 33 H 0.02 0.97 7.36 -2.39 -0.02 0.96 16 34 H 0.26 15.90 6.45 -92.71 -0.60 15.30 16 Total: -1.00 -61.57 263.12 -0.73 -62.31 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.45 Total: 20.65 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 3.82 Total: -22.15 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -7.05 Total: -112.56 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.75 kcal Total: -61.57 -0.73 -62.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.183 kcal (2) G-P(sol) polarization free energy of solvation -61.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds