Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99737 * 2 1 4 4 N 1.46906 * 109.46686 * 125.00172 * 3 2 1 5 5 C 1.48059 * 111.00412 * 312.17123 * 4 3 2 6 6 C 1.53696 * 112.47225 * 192.19921 * 5 4 3 7 7 C 1.50799 * 112.10113 * 318.54765 * 6 5 4 8 8 N 1.47913 * 108.49574 * 92.55082 * 7 6 5 9 9 C 1.40019 * 114.06729 * 280.07893 * 8 7 6 10 10 C 1.44577 * 110.99685 * 184.47832 * 4 3 2 11 11 H 1.09001 * 109.67972 * 100.48389 * 10 4 3 12 12 C 1.50697 * 109.57701 * 340.15997 * 10 4 3 13 13 H 1.07997 * 120.00323 * 297.50017 * 12 10 4 14 14 C 1.37875 * 119.99959 * 117.50364 * 12 10 4 15 15 N 1.31517 * 120.00000 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 120.00166 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46973 * 89.99745 * 16 14 12 18 18 H 1.48503 * 109.47001 * 209.99838 * 16 14 12 19 19 H 1.48496 * 109.46853 * 329.99876 * 16 14 12 20 20 H 1.07999 * 120.00079 * 179.97438 * 1 2 3 21 21 H 1.08002 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99614 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47512 * 5.00551 * 3 2 1 24 24 H 1.08999 * 109.47246 * 245.00281 * 3 2 1 25 25 H 1.09007 * 108.87942 * 312.96756 * 5 4 3 26 26 H 1.08997 * 108.88398 * 71.51925 * 5 4 3 27 27 H 1.08996 * 108.95438 * 197.86885 * 6 5 4 28 28 H 1.08999 * 108.95280 * 79.22560 * 6 5 4 29 29 H 1.08998 * 109.63140 * 332.85005 * 7 6 5 30 30 H 1.08996 * 109.63203 * 212.24691 * 7 6 5 31 31 H 1.00900 * 111.00025 * 153.79767 * 8 7 6 32 32 H 1.09002 * 108.96273 * 182.48205 * 9 8 7 33 33 H 1.09004 * 108.95937 * 301.22801 * 9 8 7 34 34 H 0.97001 * 119.99894 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 2.3227 0.9147 2.3853 6 6 3.1672 1.2119 3.6346 7 6 4.6253 0.8899 3.4236 8 7 5.3130 2.1131 2.9561 9 6 5.1421 2.3783 1.5919 10 6 3.6620 2.6119 1.2278 11 1 3.1872 3.2172 1.9999 12 6 3.5744 3.3242 -0.0973 13 1 4.0354 2.8931 -0.9737 14 6 2.9060 4.5264 -0.1909 15 7 2.3443 5.0513 0.8763 16 14 2.7968 5.4092 -1.8336 17 1 1.5801 4.9601 -2.5569 18 1 2.7238 6.8745 -1.6041 19 1 3.9997 5.0945 -2.6454 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5401 0.9353 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 1.3585 2.1316 0.0897 24 1 2.6212 1.4027 -0.9314 25 1 1.3729 1.4432 2.4677 26 1 2.1269 -0.1566 2.3402 27 1 2.7901 0.6172 4.4666 28 1 3.0704 2.2685 3.8843 29 1 4.7222 0.1056 2.6729 30 1 5.0667 0.5581 4.3633 31 1 6.2917 2.0935 3.2007 32 1 5.7159 3.2670 1.3292 33 1 5.5176 1.5319 1.0168 34 1 1.8736 5.8969 0.8104 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = 11.966802 kcal Electronic energy + Delta-G solvation = -14816.231799 eV Core-core repulsion = 12555.749272 eV Total energy + Delta-G solvation = -2260.482528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.07486 -36.84028 -35.07471 -33.72032 -32.82888 -28.81586 -27.74823 -25.49656 -24.80627 -21.59660 -20.75763 -20.13112 -18.74374 -17.29828 -16.66815 -16.31700 -15.98827 -15.61520 -15.30423 -14.83614 -14.33448 -14.04407 -13.45452 -13.32260 -12.94054 -12.82374 -12.64676 -12.42039 -12.07406 -11.91848 -11.65863 -11.40045 -11.23381 -11.07392 -10.70959 -10.14511 -9.05940 -8.65268 -8.18695 -6.28492 1.36441 1.38166 1.45152 1.48670 2.37414 3.07118 3.51807 3.63090 4.16889 4.20446 4.31399 4.37224 4.55172 4.66127 4.78285 4.88155 4.90356 4.98386 5.04927 5.11571 5.22818 5.26153 5.41173 5.47799 5.60752 5.73752 5.75985 5.91202 6.07320 6.52350 6.62439 6.86783 6.98978 7.01232 7.40545 8.89505 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.014250 C = 0.010177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.039399 B = 1964.482567 C = 2750.587595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.119 3.881 4 N -0.547 5.547 5 C 0.068 3.932 6 C -0.116 4.116 7 C 0.080 3.920 8 N -0.710 5.710 9 C 0.105 3.895 10 C 0.201 3.799 11 H 0.020 0.980 12 C -0.522 4.522 13 H 0.052 0.948 14 C 0.021 3.979 15 N -0.923 5.923 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.264 1.264 20 H 0.124 0.876 21 H 0.077 0.923 22 H 0.123 0.877 23 H -0.001 1.001 24 H 0.064 0.936 25 H -0.005 1.005 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.345 0.655 32 H 0.043 0.957 33 H 0.000 1.000 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -9.215 2.189 9.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.008 4.008 4 N -0.272 5.272 5 C -0.059 4.059 6 C -0.154 4.154 7 C -0.048 4.048 8 N -0.343 5.343 9 C -0.027 4.027 10 C 0.093 3.907 11 H 0.038 0.962 12 C -0.562 4.562 13 H 0.070 0.930 14 C -0.179 4.179 15 N -0.563 5.563 16 Si 0.776 3.224 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.188 1.188 20 H 0.142 0.858 21 H 0.095 0.905 22 H 0.141 0.859 23 H 0.018 0.982 24 H 0.083 0.917 25 H 0.014 0.986 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.165 0.835 32 H 0.061 0.939 33 H 0.018 0.982 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.489 -8.993 2.333 9.303 hybrid contribution -0.293 1.015 -1.078 1.510 sum 0.196 -7.978 1.254 8.078 Atomic orbital electron populations 1.23896 0.95589 1.01926 1.01918 1.23169 0.96110 0.98435 0.98946 1.20703 0.92861 0.92370 0.94911 1.61292 1.29962 1.32928 1.03006 1.22299 0.94230 0.99287 0.90102 1.21441 0.96053 1.01088 0.96820 1.21542 0.93680 0.89883 0.99660 1.57654 1.17875 1.39586 1.19163 1.20688 0.98250 0.96889 0.86842 1.19152 0.90441 0.85363 0.95704 0.96151 1.21302 1.34115 1.05385 0.95363 0.93005 1.25725 0.94642 0.97979 0.99554 1.70068 1.36453 1.19492 1.30242 0.85655 0.78838 0.77658 0.80201 1.20130 1.20899 1.18788 0.85809 0.90460 0.85947 0.98249 0.91739 0.98635 0.90569 0.89087 0.94264 0.94449 0.88957 0.83491 0.93858 0.98196 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.02 14.32 67.78 0.97 -5.05 16 2 C -0.15 -5.14 7.97 25.64 0.20 -4.93 16 3 C 0.12 5.32 4.44 85.55 0.38 5.70 16 4 N -0.55 -24.69 4.06 -878.67 -3.57 -28.26 16 5 C 0.07 2.71 4.68 86.31 0.40 3.12 16 6 C -0.12 -4.11 5.36 30.11 0.16 -3.95 16 7 C 0.08 2.62 6.23 85.39 0.53 3.15 16 8 N -0.71 -26.89 6.21 -528.24 -3.28 -30.16 16 9 C 0.11 4.75 5.51 87.95 0.48 5.23 16 10 C 0.20 10.34 2.29 45.01 0.10 10.44 16 11 H 0.02 1.23 5.73 -2.39 -0.01 1.22 16 12 C -0.52 -28.81 5.70 25.60 0.15 -28.67 16 13 H 0.05 2.85 7.36 -2.91 -0.02 2.83 16 14 C 0.02 1.17 5.44 84.65 0.46 1.63 16 15 N -0.92 -55.15 12.61 21.45 0.27 -54.88 16 16 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 20 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 21 H 0.08 2.61 7.84 -2.91 -0.02 2.59 16 22 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 23 H 0.00 -0.04 7.44 -2.39 -0.02 -0.06 16 24 H 0.06 3.04 6.78 -2.39 -0.02 3.03 16 25 H 0.00 -0.21 8.03 -2.38 -0.02 -0.23 16 26 H 0.08 2.62 7.32 -2.39 -0.02 2.60 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.04 1.66 7.23 -2.39 -0.02 1.65 16 29 H 0.04 1.27 7.57 -2.39 -0.02 1.25 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.35 10.80 8.85 -89.69 -0.79 10.01 16 32 H 0.04 2.06 7.98 -2.39 -0.02 2.04 16 33 H 0.00 0.00 8.06 -2.38 -0.02 -0.02 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -62.70 266.60 -0.44 -63.14 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.27 Total: 17.42 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 3.85 Total: -13.32 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -6.58 Total: -113.31 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -62.70 -0.44 -63.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.110 kcal (2) G-P(sol) polarization free energy of solvation -62.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds