Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99558 * 2 1 4 4 H 1.48493 * 109.46971 * 269.99831 * 3 2 1 5 5 H 1.48503 * 109.47231 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.46935 * 150.00081 * 3 2 1 7 7 C 1.37869 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00389 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47394 * 185.59613 * 9 7 2 11 11 C 1.46653 * 110.99664 * 176.30292 * 10 9 7 12 12 C 1.53343 * 108.18855 * 173.56874 * 11 10 9 13 13 C 1.52755 * 108.28749 * 63.22244 * 12 11 10 14 14 C 1.53097 * 110.60268 * 299.99409 * 13 12 11 15 15 H 1.09004 * 112.02816 * 284.30797 * 14 13 12 16 16 C 1.55215 * 106.65291 * 161.07044 * 14 13 12 17 17 N 1.48553 * 106.49383 * 266.99676 * 16 14 13 18 18 C 1.48188 * 108.68541 * 0.22979 * 17 16 14 19 19 C 1.43467 * 111.20326 * 48.35012 * 10 9 7 20 20 H 1.09005 * 109.14682 * 301.13596 * 19 10 9 21 21 H 0.96995 * 120.00083 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46771 * 65.59995 * 9 7 2 23 23 H 1.08994 * 109.47362 * 305.59987 * 9 7 2 24 24 H 1.08998 * 109.72132 * 53.89340 * 11 10 9 25 25 H 1.09003 * 109.75283 * 293.25965 * 11 10 9 26 26 H 1.09004 * 109.69969 * 303.52433 * 12 11 10 27 27 H 1.08999 * 109.69955 * 182.91742 * 12 11 10 28 28 H 1.09005 * 109.24560 * 179.70622 * 13 12 11 29 29 H 1.08995 * 109.25499 * 60.28584 * 13 12 11 30 30 H 1.08998 * 109.92330 * 26.79605 * 16 14 13 31 31 H 1.09000 * 109.92869 * 148.13429 * 16 14 13 32 32 H 1.00894 * 111.40613 * 237.62225 * 17 16 14 33 33 H 1.08996 * 110.50101 * 217.39631 * 18 17 16 34 34 H 1.09006 * 110.61186 * 94.79101 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 7 2.2002 -3.6123 0.1371 11 6 1.4956 -4.8951 0.2300 12 6 2.5400 -6.0177 0.2057 13 6 3.4252 -5.8756 1.4425 14 6 4.1336 -4.5184 1.4450 15 1 4.9622 -4.4884 0.7375 16 6 4.5957 -4.2606 2.9042 17 7 3.5137 -3.4801 3.5576 18 6 2.4268 -3.2603 2.5746 19 6 3.1258 -3.3777 1.2079 20 1 3.6697 -2.4531 1.0142 21 1 -0.4850 0.8400 0.0004 22 1 0.7015 -2.6021 -0.9339 23 1 0.5518 -2.5142 0.8375 24 1 0.8181 -5.0048 -0.6167 25 1 0.9307 -4.9385 1.1612 26 1 3.1495 -5.9331 -0.6941 27 1 2.0393 -6.9857 0.2215 28 1 4.1713 -6.6704 1.4436 29 1 2.8089 -5.9610 2.3374 30 1 4.7478 -5.2093 3.4188 31 1 5.5196 -3.6821 2.9046 32 1 3.8584 -2.6029 3.9177 33 1 1.9952 -2.2671 2.6985 34 1 1.6569 -4.0252 2.6764 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221845239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = 2.741530 kcal Electronic energy + Delta-G solvation = -14849.193416 eV Core-core repulsion = 12588.310850 eV Total energy + Delta-G solvation = -2260.882565 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.75557 -35.28083 -33.57112 -32.01029 -29.31195 -27.52244 -26.61445 -23.77576 -22.40807 -21.37380 -20.39880 -18.03232 -16.54477 -16.01263 -15.45246 -14.46980 -14.22336 -13.80460 -13.48068 -13.02857 -12.51733 -12.44908 -12.30344 -11.73531 -11.67513 -11.32525 -11.01081 -10.84315 -10.69821 -10.64947 -10.15247 -10.03244 -9.79637 -9.58549 -8.99258 -8.52095 -8.25269 -6.94814 -6.07871 -4.10029 3.27635 3.34235 3.36278 4.37336 4.56565 5.00190 5.04436 5.19126 5.28109 5.37016 5.58295 5.63577 5.77703 5.85929 6.00945 6.05539 6.09411 6.20652 6.30020 6.34491 6.47625 6.55584 6.59694 6.71344 6.95635 7.19152 7.35179 7.47459 7.74589 7.76949 8.09843 8.27321 8.60971 8.98570 9.54900 11.02935 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037090 B = 0.010682 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.732367 B = 2620.686242 C = 3035.095252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.197 3.803 10 N -0.540 5.540 11 C 0.060 3.940 12 C -0.116 4.116 13 C -0.107 4.107 14 C -0.108 4.108 15 H 0.082 0.918 16 C 0.051 3.949 17 N -0.690 5.690 18 C 0.020 3.980 19 C 0.089 3.911 20 H 0.091 0.909 21 H 0.262 0.738 22 H 0.028 0.972 23 H -0.002 1.002 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.335 0.665 33 H 0.076 0.924 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -8.471 3.530 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.263 5.263 11 C -0.068 4.068 12 C -0.154 4.154 13 C -0.145 4.145 14 C -0.127 4.127 15 H 0.100 0.900 16 C -0.078 4.078 17 N -0.319 5.319 18 C -0.111 4.111 19 C -0.023 4.023 20 H 0.109 0.891 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.016 0.984 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.095 0.905 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.168 -8.924 3.451 11.383 hybrid contribution 0.278 1.703 0.115 1.729 sum 6.446 -7.221 3.566 10.315 Atomic orbital electron populations 1.69955 1.06013 1.26805 1.50563 1.24973 0.94828 0.99220 0.95302 0.86552 0.79682 0.83316 0.78191 1.20583 1.21248 1.19957 1.21210 0.93248 0.90177 1.50722 0.91928 1.19665 0.90033 0.86813 0.96231 1.60016 1.20774 1.02752 1.42782 1.21974 0.95122 0.90150 0.99561 1.21581 0.97850 0.97475 0.98504 1.21516 0.98486 0.96085 0.98431 1.22427 0.98482 0.95720 0.96103 0.89981 1.23049 0.93377 0.98265 0.93156 1.61838 1.10318 1.23545 1.36160 1.23362 0.94352 1.01653 0.91731 1.21849 0.93716 0.97556 0.89169 0.89097 0.92862 0.95438 0.98448 0.91500 0.95673 0.91451 0.92494 0.92907 0.92057 0.91170 0.93587 0.85010 0.90500 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.08 8.33 -34.44 -0.29 -14.37 16 8 H 0.06 1.70 6.08 -52.48 -0.32 1.38 16 9 C 0.20 5.07 4.45 -4.97 -0.02 5.05 16 10 N -0.54 -11.63 4.54 -229.41 -1.04 -12.67 16 11 C 0.06 1.11 5.33 -3.78 -0.02 1.09 16 12 C -0.12 -1.77 6.12 -26.68 -0.16 -1.93 16 13 C -0.11 -1.59 4.72 -26.81 -0.13 -1.71 16 14 C -0.11 -1.73 3.64 -88.85 -0.32 -2.05 16 15 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.05 0.75 6.98 -1.74 -0.01 0.74 16 17 N -0.69 -11.39 7.41 -109.71 -0.81 -12.20 16 18 C 0.02 0.38 5.65 -2.62 -0.01 0.37 16 19 C 0.09 1.75 2.20 -68.49 -0.15 1.60 16 20 H 0.09 2.01 5.81 -51.93 -0.30 1.71 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.00 -0.06 7.64 -51.93 -0.40 -0.46 16 24 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 25 H 0.03 0.48 6.60 -51.93 -0.34 0.13 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.96 7.31 -51.93 -0.38 0.58 16 30 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.33 5.14 8.93 -39.30 -0.35 4.79 16 33 H 0.08 1.67 8.04 -51.93 -0.42 1.26 16 34 H 0.06 1.29 6.11 -51.93 -0.32 0.98 16 LS Contribution 258.51 15.07 3.90 3.90 Total: -1.00 -28.44 258.51 -8.78 -37.22 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.32 Total: 2.59 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.22 Total: -9.69 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -1.12 Total: -50.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.44 -8.78 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221845239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.964 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds