Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99558 * 2 1 4 4 H 1.48493 * 109.46971 * 269.99831 * 3 2 1 5 5 H 1.48503 * 109.47231 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.46935 * 150.00081 * 3 2 1 7 7 C 1.37869 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00389 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47394 * 185.59613 * 9 7 2 11 11 C 1.46653 * 110.99664 * 176.30292 * 10 9 7 12 12 C 1.53343 * 108.18855 * 173.56874 * 11 10 9 13 13 C 1.52755 * 108.28749 * 63.22244 * 12 11 10 14 14 C 1.53097 * 110.60268 * 299.99409 * 13 12 11 15 15 H 1.09004 * 112.02816 * 284.30797 * 14 13 12 16 16 C 1.55215 * 106.65291 * 161.07044 * 14 13 12 17 17 N 1.48553 * 106.49383 * 266.99676 * 16 14 13 18 18 C 1.48188 * 108.68541 * 0.22979 * 17 16 14 19 19 C 1.43467 * 111.20326 * 48.35012 * 10 9 7 20 20 H 1.09005 * 109.14682 * 301.13596 * 19 10 9 21 21 H 0.96995 * 120.00083 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46771 * 65.59995 * 9 7 2 23 23 H 1.08994 * 109.47362 * 305.59987 * 9 7 2 24 24 H 1.08998 * 109.72132 * 53.89340 * 11 10 9 25 25 H 1.09003 * 109.75283 * 293.25965 * 11 10 9 26 26 H 1.09004 * 109.69969 * 303.52433 * 12 11 10 27 27 H 1.08999 * 109.69955 * 182.91742 * 12 11 10 28 28 H 1.09005 * 109.24560 * 179.70622 * 13 12 11 29 29 H 1.08995 * 109.25499 * 60.28584 * 13 12 11 30 30 H 1.08998 * 109.92330 * 26.79605 * 16 14 13 31 31 H 1.09000 * 109.92869 * 148.13429 * 16 14 13 32 32 H 1.00894 * 111.40613 * 237.62225 * 17 16 14 33 33 H 1.08996 * 110.50101 * 217.39631 * 18 17 16 34 34 H 1.09006 * 110.61186 * 94.79101 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 7 2.2002 -3.6123 0.1371 11 6 1.4956 -4.8951 0.2300 12 6 2.5400 -6.0177 0.2057 13 6 3.4252 -5.8756 1.4425 14 6 4.1336 -4.5184 1.4450 15 1 4.9622 -4.4884 0.7375 16 6 4.5957 -4.2606 2.9042 17 7 3.5137 -3.4801 3.5576 18 6 2.4268 -3.2603 2.5746 19 6 3.1258 -3.3777 1.2079 20 1 3.6697 -2.4531 1.0142 21 1 -0.4850 0.8400 0.0004 22 1 0.7015 -2.6021 -0.9339 23 1 0.5518 -2.5142 0.8375 24 1 0.8181 -5.0048 -0.6167 25 1 0.9307 -4.9385 1.1612 26 1 3.1495 -5.9331 -0.6941 27 1 2.0393 -6.9857 0.2215 28 1 4.1713 -6.6704 1.4436 29 1 2.8089 -5.9610 2.3374 30 1 4.7478 -5.2093 3.4188 31 1 5.5196 -3.6821 2.9046 32 1 3.8584 -2.6029 3.9177 33 1 1.9952 -2.2671 2.6985 34 1 1.6569 -4.0252 2.6764 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221845239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = -18.364993 kcal Electronic energy + Delta-G solvation = -14850.108663 eV Core-core repulsion = 12588.310850 eV Total energy + Delta-G solvation = -2261.797813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.23898 -36.85860 -35.26786 -33.83503 -30.72630 -29.26290 -28.30760 -25.46533 -24.03197 -22.95487 -21.79428 -19.52719 -18.41584 -17.66391 -17.13056 -16.28256 -15.83357 -15.16300 -14.96068 -14.47303 -14.27205 -14.02899 -13.87585 -13.32326 -13.26126 -13.00236 -12.69395 -12.65018 -12.34475 -12.15161 -11.89378 -11.51633 -11.40940 -11.09096 -10.75640 -10.63914 -9.70965 -8.66304 -8.23564 -6.33595 1.37663 1.38797 1.49062 2.36535 3.09052 3.10247 3.52476 3.72017 3.89593 4.10299 4.14009 4.29226 4.37262 4.53160 4.55744 4.71544 4.78468 4.88943 4.93853 5.05352 5.07424 5.13857 5.19484 5.27633 5.29952 5.41794 5.57460 5.64215 5.81157 6.02725 6.39018 6.45531 6.77182 6.88487 7.36604 8.87938 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037090 B = 0.010682 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.732367 B = 2620.686242 C = 3035.095252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.544 5.544 11 C 0.055 3.945 12 C -0.107 4.107 13 C -0.104 4.104 14 C -0.103 4.103 15 H 0.093 0.907 16 C 0.054 3.946 17 N -0.688 5.688 18 C 0.033 3.967 19 C 0.085 3.915 20 H 0.063 0.937 21 H 0.264 0.736 22 H -0.002 1.002 23 H -0.033 1.033 24 H 0.062 0.938 25 H 0.017 0.983 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.342 0.658 33 H 0.040 0.960 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.556 -9.505 4.010 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.081 0.919 9 C 0.087 3.913 10 N -0.267 5.267 11 C -0.073 4.073 12 C -0.145 4.145 13 C -0.141 4.141 14 C -0.122 4.122 15 H 0.111 0.889 16 C -0.075 4.075 17 N -0.317 5.317 18 C -0.099 4.099 19 C -0.027 4.027 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.016 0.984 23 H -0.015 1.015 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.059 0.941 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.370 -9.981 3.939 13.608 hybrid contribution -0.427 1.981 -0.035 2.027 sum 7.943 -7.999 3.904 11.930 Atomic orbital electron populations 1.70087 1.07698 1.27841 1.51539 1.25867 0.95661 1.03018 0.94755 0.85454 0.78599 0.78573 0.78454 1.19892 1.20826 1.18828 1.21468 0.93374 0.91071 1.50376 0.91850 1.19285 0.90097 0.88480 0.93417 1.59942 1.20130 1.02613 1.44058 1.22115 0.96250 0.89932 0.98971 1.21555 0.96953 0.97035 0.98963 1.21516 0.98928 0.96075 0.97611 1.22441 0.97581 0.94871 0.97316 0.88873 1.23158 0.93122 0.99187 0.92018 1.61847 1.10512 1.24153 1.35220 1.23050 0.95060 0.99186 0.92588 1.21856 0.93906 0.98397 0.88522 0.91930 0.92707 0.98351 1.01496 0.91948 0.96475 0.91332 0.89626 0.89513 0.92803 0.89012 0.91776 0.84271 0.94106 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.44 0.28 -55.94 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.52 -29.56 8.33 25.60 0.21 -29.35 16 8 H 0.06 3.50 6.08 -2.91 -0.02 3.48 16 9 C 0.21 11.51 4.45 85.56 0.38 11.89 16 10 N -0.54 -23.90 4.54 -879.72 -3.99 -27.89 16 11 C 0.05 2.03 5.33 86.47 0.46 2.49 16 12 C -0.11 -2.98 6.12 30.63 0.19 -2.80 16 13 C -0.10 -2.69 4.72 30.55 0.14 -2.55 16 14 C -0.10 -3.03 3.64 -9.65 -0.04 -3.06 16 15 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 16 C 0.05 1.41 6.98 86.74 0.61 2.02 16 17 N -0.69 -21.74 7.41 -501.02 -3.71 -25.45 16 18 C 0.03 1.28 5.65 86.38 0.49 1.77 16 19 C 0.08 3.34 2.20 46.23 0.10 3.44 16 20 H 0.06 2.81 5.81 -2.38 -0.01 2.79 16 21 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 22 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 23 H -0.03 -1.93 7.64 -2.39 -0.02 -1.95 16 24 H 0.06 2.31 8.12 -2.39 -0.02 2.29 16 25 H 0.02 0.66 6.60 -2.39 -0.02 0.64 16 26 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.05 1.51 7.31 -2.39 -0.02 1.49 16 30 H 0.09 2.08 7.73 -2.39 -0.02 2.06 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.34 10.07 8.93 -89.70 -0.80 9.27 16 33 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 34 H 0.06 2.27 6.11 -2.38 -0.01 2.26 16 Total: -1.00 -62.80 258.51 -2.11 -64.91 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.28 Total: 13.56 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 3.01 Total: -15.38 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -7.42 Total: -109.28 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -62.80 -2.11 -64.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221845239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.540 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds