Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99477 * 2 1 4 4 H 1.48498 * 109.47218 * 269.99714 * 3 2 1 5 5 H 1.48498 * 109.47432 * 30.00329 * 3 2 1 6 6 H 1.48501 * 109.46820 * 149.99988 * 3 2 1 7 7 C 1.37878 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99554 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46849 * 179.97438 * 9 7 2 11 11 C 1.48619 * 111.00005 * 190.00102 * 10 9 7 12 12 C 1.52410 * 105.88781 * 241.10798 * 11 10 9 13 13 H 1.09006 * 110.00774 * 87.98356 * 12 11 10 14 14 C 1.51674 * 117.03985 * 215.43771 * 12 11 10 15 15 C 1.53940 * 106.68963 * 176.18365 * 14 12 11 16 16 C 1.52556 * 111.45413 * 305.01996 * 15 14 12 17 17 N 1.47732 * 111.93389 * 52.92417 * 16 15 14 18 18 C 1.45289 * 108.46425 * 301.12972 * 17 16 15 19 19 H 1.08996 * 110.28325 * 307.08604 * 18 17 16 20 20 C 1.49057 * 110.99887 * 69.49863 * 10 9 7 21 21 H 0.97003 * 120.00472 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47293 * 60.00213 * 9 7 2 23 23 H 1.08994 * 109.47247 * 299.99761 * 9 7 2 24 24 H 1.08992 * 110.17094 * 122.00342 * 11 10 9 25 25 H 1.09004 * 110.23031 * 0.24420 * 11 10 9 26 26 H 1.09004 * 110.00232 * 56.88955 * 14 12 11 27 27 H 1.08992 * 110.00689 * 295.47699 * 14 12 11 28 28 H 1.08997 * 109.08554 * 184.51476 * 15 14 12 29 29 H 1.09001 * 109.08282 * 65.52538 * 15 14 12 30 30 H 1.08996 * 108.98385 * 173.55251 * 16 15 14 31 31 H 1.08997 * 108.98491 * 292.28597 * 16 15 14 32 32 H 1.00898 * 110.99683 * 178.93613 * 17 16 15 33 33 H 1.08998 * 110.62614 * 27.89031 * 20 10 9 34 34 H 1.08996 * 110.62515 * 264.87165 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4672 -2.6255 0.2394 12 6 6.0732 -3.2712 -1.0010 13 1 6.2886 -2.5096 -1.7505 14 6 7.2749 -4.1727 -0.7919 15 6 7.6272 -4.7661 -2.1680 16 6 6.4274 -5.4679 -2.7967 17 7 5.2385 -4.5923 -2.8443 18 6 4.9118 -4.1857 -1.4882 19 1 4.8202 -5.0597 -0.8434 20 6 3.7194 -3.2453 -1.3042 21 1 -0.4851 0.8400 0.0004 22 1 3.8753 -0.6803 0.8889 23 1 3.8745 -0.6799 -0.8911 24 1 5.6845 -3.2283 1.1210 25 1 5.8603 -1.6169 0.3681 26 1 7.0247 -4.9718 -0.0941 27 1 8.1146 -3.5921 -0.4102 28 1 8.4382 -5.4845 -2.0492 29 1 7.9570 -3.9639 -2.8282 30 1 6.6855 -5.7709 -3.8114 31 1 6.1902 -6.3568 -2.2122 32 1 4.4591 -5.0641 -3.2779 33 1 3.6807 -2.5122 -2.1099 34 1 2.7889 -3.8105 -1.2530 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221953367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = 6.782919 kcal Electronic energy + Delta-G solvation = -14364.369577 eV Core-core repulsion = 12103.662260 eV Total energy + Delta-G solvation = -2260.707318 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74797 -36.05375 -32.75715 -32.41839 -30.55655 -27.40554 -27.15845 -23.93327 -21.59998 -21.37673 -20.06540 -19.55921 -16.77756 -15.91326 -15.23455 -14.70669 -14.47790 -14.07864 -13.82588 -13.51904 -12.89459 -12.65485 -12.40329 -12.17205 -11.80566 -11.51634 -11.22517 -10.85581 -10.69203 -10.55726 -10.34609 -10.10941 -9.87859 -9.72305 -9.22844 -8.54996 -8.41472 -7.37761 -6.02113 -3.99088 3.30701 3.37939 3.40331 4.15466 4.44879 4.63021 4.82181 4.87336 5.10829 5.26722 5.29704 5.35677 5.40040 5.63833 5.72800 5.73486 5.83853 5.88964 5.99371 6.15936 6.22276 6.33481 6.48261 6.54263 6.63307 6.79839 6.95585 7.11887 7.44947 7.60236 7.91863 7.96798 8.68665 9.07094 9.59927 11.11243 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054991 B = 0.007731 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.051821 B = 3620.781649 C = 3838.233480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.079 0.921 9 C 0.157 3.843 10 N -0.515 5.515 11 C 0.044 3.956 12 C -0.111 4.111 13 H 0.078 0.922 14 C -0.106 4.106 15 C -0.116 4.116 16 C 0.057 3.943 17 N -0.668 5.668 18 C 0.063 3.937 19 H 0.048 0.952 20 C 0.069 3.931 21 H 0.263 0.737 22 H 0.028 0.972 23 H -0.014 1.014 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.340 0.660 33 H 0.055 0.945 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.233 -8.742 -4.029 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.097 0.903 9 C 0.030 3.970 10 N -0.239 5.239 11 C -0.084 4.084 12 C -0.131 4.131 13 H 0.097 0.903 14 C -0.144 4.144 15 C -0.154 4.154 16 C -0.073 4.073 17 N -0.299 5.299 18 C -0.048 4.048 19 H 0.065 0.935 20 C -0.059 4.059 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.003 0.997 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.158 0.842 33 H 0.073 0.927 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.151 -8.277 -3.785 16.825 hybrid contribution 0.380 0.586 -0.299 0.759 sum 14.531 -7.691 -4.084 16.940 Atomic orbital electron populations 1.69897 1.06105 1.26777 1.51281 1.24905 0.94744 0.98830 0.94905 0.86860 0.80347 0.84068 0.78473 1.20334 1.21137 1.19225 1.21028 0.88740 0.94725 1.50040 0.90253 1.20398 0.97209 0.84335 0.95041 1.64309 1.10008 1.19607 1.29962 1.22586 0.89640 0.99465 0.96753 1.22144 0.94908 0.97463 0.98543 0.90341 1.21394 0.97757 0.98604 0.96613 1.21591 0.96823 1.00190 0.96796 1.21932 0.91491 0.93702 1.00156 1.60864 1.07587 1.42770 1.18643 1.22429 0.96417 0.97168 0.88827 0.93450 1.22520 0.95947 0.95918 0.91503 0.92706 0.95392 0.99652 0.91406 0.92992 0.91939 0.91811 0.91844 0.91572 0.91086 0.95490 0.84248 0.92715 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.78 9.37 -34.44 -0.32 -15.10 16 8 H 0.08 2.51 8.02 -52.49 -0.42 2.09 16 9 C 0.16 3.94 3.45 -4.97 -0.02 3.92 16 10 N -0.51 -11.21 5.21 -233.08 -1.21 -12.42 16 11 C 0.04 0.78 6.57 -3.17 -0.02 0.76 16 12 C -0.11 -1.70 2.48 -90.19 -0.22 -1.93 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.11 -1.28 5.74 -26.91 -0.15 -1.44 16 15 C -0.12 -1.25 5.98 -26.47 -0.16 -1.41 16 16 C 0.06 0.63 6.44 -3.59 -0.02 0.61 16 17 N -0.67 -9.09 6.89 -105.97 -0.73 -9.82 16 18 C 0.06 0.99 2.81 -67.19 -0.19 0.80 16 19 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16 20 C 0.07 1.37 6.04 -2.64 -0.02 1.35 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.03 0.71 7.07 -51.93 -0.37 0.34 16 23 H -0.01 -0.36 7.29 -51.93 -0.38 -0.74 16 24 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 25 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 26 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.34 4.17 8.89 -39.29 -0.35 3.82 16 33 H 0.05 1.16 7.67 -51.93 -0.40 0.76 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -30.86 264.40 -8.76 -39.62 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.68 Total: -0.82 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.22 Total: -10.54 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -1.17 Total: -49.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.86 -8.76 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221953367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.401 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds