Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99477 * 2 1 4 4 H 1.48498 * 109.47218 * 269.99714 * 3 2 1 5 5 H 1.48498 * 109.47432 * 30.00329 * 3 2 1 6 6 H 1.48501 * 109.46820 * 149.99988 * 3 2 1 7 7 C 1.37878 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99554 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46849 * 179.97438 * 9 7 2 11 11 C 1.48619 * 111.00005 * 190.00102 * 10 9 7 12 12 C 1.52410 * 105.88781 * 241.10798 * 11 10 9 13 13 H 1.09006 * 110.00774 * 87.98356 * 12 11 10 14 14 C 1.51674 * 117.03985 * 215.43771 * 12 11 10 15 15 C 1.53940 * 106.68963 * 176.18365 * 14 12 11 16 16 C 1.52556 * 111.45413 * 305.01996 * 15 14 12 17 17 N 1.47732 * 111.93389 * 52.92417 * 16 15 14 18 18 C 1.45289 * 108.46425 * 301.12972 * 17 16 15 19 19 H 1.08996 * 110.28325 * 307.08604 * 18 17 16 20 20 C 1.49057 * 110.99887 * 69.49863 * 10 9 7 21 21 H 0.97003 * 120.00472 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47293 * 60.00213 * 9 7 2 23 23 H 1.08994 * 109.47247 * 299.99761 * 9 7 2 24 24 H 1.08992 * 110.17094 * 122.00342 * 11 10 9 25 25 H 1.09004 * 110.23031 * 0.24420 * 11 10 9 26 26 H 1.09004 * 110.00232 * 56.88955 * 14 12 11 27 27 H 1.08992 * 110.00689 * 295.47699 * 14 12 11 28 28 H 1.08997 * 109.08554 * 184.51476 * 15 14 12 29 29 H 1.09001 * 109.08282 * 65.52538 * 15 14 12 30 30 H 1.08996 * 108.98385 * 173.55251 * 16 15 14 31 31 H 1.08997 * 108.98491 * 292.28597 * 16 15 14 32 32 H 1.00898 * 110.99683 * 178.93613 * 17 16 15 33 33 H 1.08998 * 110.62614 * 27.89031 * 20 10 9 34 34 H 1.08996 * 110.62515 * 264.87165 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4672 -2.6255 0.2394 12 6 6.0732 -3.2712 -1.0010 13 1 6.2886 -2.5096 -1.7505 14 6 7.2749 -4.1727 -0.7919 15 6 7.6272 -4.7661 -2.1680 16 6 6.4274 -5.4679 -2.7967 17 7 5.2385 -4.5923 -2.8443 18 6 4.9118 -4.1857 -1.4882 19 1 4.8202 -5.0597 -0.8434 20 6 3.7194 -3.2453 -1.3042 21 1 -0.4851 0.8400 0.0004 22 1 3.8753 -0.6803 0.8889 23 1 3.8745 -0.6799 -0.8911 24 1 5.6845 -3.2283 1.1210 25 1 5.8603 -1.6169 0.3681 26 1 7.0247 -4.9718 -0.0941 27 1 8.1146 -3.5921 -0.4102 28 1 8.4382 -5.4845 -2.0492 29 1 7.9570 -3.9639 -2.8282 30 1 6.6855 -5.7709 -3.8114 31 1 6.1902 -6.3568 -2.2122 32 1 4.4591 -5.0641 -3.2779 33 1 3.6807 -2.5122 -2.1099 34 1 2.7889 -3.8105 -1.2530 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221953367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = -17.166456 kcal Electronic energy + Delta-G solvation = -14365.408100 eV Core-core repulsion = 12103.662260 eV Total energy + Delta-G solvation = -2261.745840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03548 -37.45683 -34.82863 -33.56223 -32.15709 -28.92612 -28.79366 -25.36949 -23.25760 -22.44515 -21.67712 -20.75512 -18.98889 -17.18626 -16.64121 -16.16581 -15.94496 -15.68418 -15.04520 -14.86337 -14.59977 -14.06204 -13.98314 -13.59373 -13.26379 -13.09528 -12.75788 -12.51861 -11.98263 -11.89822 -11.82173 -11.68327 -11.51395 -11.28684 -11.02728 -10.81320 -9.48129 -9.10421 -8.30641 -6.34458 1.32582 1.34315 1.45486 2.32560 2.93426 3.03911 3.34775 3.58679 3.84075 3.94105 4.18418 4.25547 4.31232 4.45332 4.54963 4.63706 4.73239 4.82002 4.85570 4.86892 4.91610 4.99990 5.03100 5.14594 5.21740 5.28728 5.46795 5.52346 5.94479 5.99950 6.18845 6.43337 6.58489 6.70994 7.29325 8.86254 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054991 B = 0.007731 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.051821 B = 3620.781649 C = 3838.233480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.519 4.519 8 H 0.034 0.966 9 C 0.170 3.830 10 N -0.537 5.537 11 C 0.042 3.958 12 C -0.102 4.102 13 H 0.065 0.935 14 C -0.101 4.101 15 C -0.114 4.114 16 C 0.053 3.947 17 N -0.678 5.678 18 C 0.077 3.923 19 H 0.050 0.950 20 C 0.070 3.930 21 H 0.268 0.732 22 H 0.030 0.970 23 H -0.015 1.015 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.346 0.654 33 H 0.033 0.967 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.121 -8.836 -4.246 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.173 1.173 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.042 3.958 10 N -0.261 5.261 11 C -0.086 4.086 12 C -0.122 4.122 13 H 0.083 0.917 14 C -0.139 4.139 15 C -0.152 4.152 16 C -0.075 4.075 17 N -0.309 5.309 18 C -0.035 4.035 19 H 0.067 0.933 20 C -0.059 4.059 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.003 0.997 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.164 0.836 33 H 0.052 0.948 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.062 -8.399 -4.006 19.435 hybrid contribution -0.592 0.512 -0.242 0.819 sum 16.469 -7.888 -4.248 18.748 Atomic orbital electron populations 1.70049 1.08094 1.28189 1.52451 1.25869 0.95664 1.03186 0.94234 0.85698 0.79474 0.78552 0.79140 1.19327 1.20257 1.17329 1.21244 0.91083 0.93265 1.50105 0.94718 1.20124 0.94390 0.86494 0.94796 1.64160 1.13204 1.17595 1.31133 1.22682 0.87028 1.00274 0.98594 1.22076 0.96079 0.97345 0.96674 0.91688 1.21403 0.96468 0.98177 0.97843 1.21615 0.97321 1.00670 0.95606 1.22079 0.90381 0.93431 1.01644 1.60869 1.08820 1.44195 1.17039 1.22154 0.94453 0.96420 0.90424 0.93254 1.22410 0.97267 0.96082 0.90097 0.92332 0.95189 0.99733 0.89868 0.92836 0.91343 0.90271 0.89088 0.91986 0.89202 0.94692 0.83614 0.94811 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.52 -31.29 9.37 25.60 0.24 -31.05 16 8 H 0.03 2.33 8.02 -2.91 -0.02 2.31 16 9 C 0.17 8.56 3.45 85.56 0.30 8.86 16 10 N -0.54 -23.58 5.21 -891.34 -4.64 -28.22 16 11 C 0.04 1.43 6.57 85.77 0.56 1.99 16 12 C -0.10 -2.94 2.48 -10.51 -0.03 -2.96 16 13 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 14 C -0.10 -2.10 5.74 30.48 0.17 -1.92 16 15 C -0.11 -2.03 5.98 30.76 0.18 -1.85 16 16 C 0.05 1.02 6.44 86.00 0.55 1.57 16 17 N -0.68 -17.35 6.89 -489.18 -3.37 -20.72 16 18 C 0.08 2.35 2.81 46.12 0.13 2.48 16 19 H 0.05 1.50 7.91 -2.39 -0.02 1.49 16 20 C 0.07 2.83 6.04 85.88 0.52 3.35 16 21 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 22 H 0.03 1.50 7.07 -2.39 -0.02 1.48 16 23 H -0.01 -0.75 7.29 -2.39 -0.02 -0.77 16 24 H 0.08 2.57 8.06 -2.39 -0.02 2.55 16 25 H 0.05 1.80 7.56 -2.38 -0.02 1.78 16 26 H 0.07 1.37 8.05 -2.38 -0.02 1.36 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.03 0.63 8.09 -2.39 -0.02 0.61 16 32 H 0.35 8.11 8.89 -89.70 -0.80 7.31 16 33 H 0.03 1.49 7.67 -2.39 -0.02 1.47 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -68.11 264.40 -2.52 -70.63 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.21 Total: 10.08 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 3.10 Total: -18.61 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -7.71 Total: -109.19 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -68.11 -2.52 -70.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221953367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.463 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds