Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99664 * 2 1 4 4 H 1.48496 * 109.47487 * 274.41651 * 3 2 1 5 5 H 1.48500 * 109.47024 * 34.42004 * 3 2 1 6 6 H 1.48506 * 109.46962 * 154.41875 * 3 2 1 7 7 C 1.38810 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99666 * 188.70655 * 7 2 1 9 9 N 1.36932 * 120.00196 * 8.43123 * 7 2 1 10 10 C 1.47180 * 125.40665 * 9.38283 * 9 7 2 11 11 C 1.53989 * 105.51541 * 161.60971 * 10 9 7 12 12 H 1.09005 * 107.52032 * 276.22263 * 11 10 9 13 13 C 1.50958 * 111.67864 * 156.72580 * 11 10 9 14 14 C 1.52450 * 113.05407 * 283.25518 * 13 11 10 15 15 C 1.53206 * 108.43406 * 303.39063 * 14 13 11 16 16 C 1.52270 * 108.68345 * 64.92430 * 15 14 13 17 17 H 1.09004 * 108.91490 * 61.44835 * 16 15 14 18 18 N 1.46902 * 108.84374 * 180.02562 * 16 15 14 19 19 C 1.51753 * 112.28769 * 300.72369 * 16 15 14 20 20 H 1.09005 * 109.91038 * 279.72021 * 19 16 15 21 21 C 1.46927 * 125.41020 * 189.68868 * 9 7 2 22 22 H 0.96997 * 120.00222 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.22218 * 280.74839 * 10 9 7 24 24 H 1.08997 * 110.22548 * 42.68078 * 10 9 7 25 25 H 1.08999 * 108.38155 * 162.49960 * 13 11 10 26 26 H 1.09001 * 108.80634 * 44.30873 * 13 11 10 27 27 H 1.08993 * 109.64305 * 183.70735 * 14 13 11 28 28 H 1.08998 * 109.81557 * 63.17690 * 14 13 11 29 29 H 1.09000 * 109.60432 * 305.16114 * 15 14 13 30 30 H 1.08997 * 109.73224 * 184.76455 * 15 14 13 31 31 H 1.00897 * 111.00090 * 302.72863 * 18 16 15 32 32 H 1.00902 * 110.99853 * 66.67864 * 18 16 15 33 33 H 1.08997 * 109.87809 * 298.41885 * 21 9 7 34 34 H 1.08994 * 109.87669 * 59.57356 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4043 2.1005 -1.3958 5 1 1.4973 2.6239 0.7914 6 1 3.5913 1.4151 0.6046 7 6 2.0102 -1.2021 -0.0005 8 1 3.0809 -1.2075 0.1410 9 7 1.3367 -2.3815 -0.1749 10 6 -0.0773 -2.5066 -0.5635 11 6 -0.2368 -3.9488 -1.0793 12 1 0.0730 -3.9596 -2.1244 13 6 -1.6682 -4.4190 -0.9868 14 6 -2.0821 -4.7967 0.4310 15 6 -1.1196 -5.8714 0.9466 16 6 0.2734 -5.2664 1.0566 17 1 0.2460 -4.4439 1.7714 18 7 1.1995 -6.2944 1.5503 19 6 0.7811 -4.7446 -0.2749 20 1 1.1656 -5.5696 -0.8746 21 6 1.9092 -3.7230 0.0023 22 1 -0.4850 0.8400 0.0004 23 1 -0.7215 -2.3393 0.2997 24 1 -0.3149 -1.7959 -1.3550 25 1 -1.7864 -5.2897 -1.6318 26 1 -2.3229 -3.6245 -1.3449 27 1 -3.0991 -5.1887 0.4237 28 1 -2.0320 -3.9198 1.0765 29 1 -1.1003 -6.7096 0.2501 30 1 -1.4462 -6.2182 1.9270 31 1 0.8906 -6.6636 2.4370 32 1 1.3154 -7.0324 0.8720 33 1 2.7266 -3.8733 -0.7029 34 1 2.2719 -3.8393 1.0235 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228544727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = 8.009595 kcal Electronic energy + Delta-G solvation = -14815.685758 eV Core-core repulsion = 12555.031633 eV Total energy + Delta-G solvation = -2260.654125 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38111 -35.20235 -33.42741 -32.00301 -29.28000 -28.28463 -25.84215 -24.65891 -21.58517 -21.45044 -19.95468 -18.14036 -16.73703 -15.54993 -15.20765 -14.52702 -14.06774 -13.80907 -13.58575 -13.29801 -12.50469 -12.14572 -11.96788 -11.82967 -11.17179 -10.95564 -10.86284 -10.70586 -10.57241 -10.54944 -9.97219 -9.88508 -9.71730 -9.39757 -9.30746 -8.47641 -8.32421 -6.65952 -5.64678 -2.95974 3.45218 3.50478 3.52513 4.58249 4.75878 5.03036 5.14952 5.39467 5.51772 5.54379 5.62376 5.73111 5.80151 5.90226 5.97734 6.02847 6.17724 6.31393 6.43268 6.53956 6.58110 6.65378 6.76339 6.87913 7.02414 7.16590 7.43413 7.63680 7.69854 7.74233 7.90031 8.37440 9.31606 9.93563 10.61642 11.48316 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044833 B = 0.009795 C = 0.008795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.391805 B = 2858.060474 C = 3183.034545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.075 0.925 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.111 4.111 12 H 0.058 0.942 13 C -0.097 4.097 14 C -0.113 4.113 15 C -0.147 4.147 16 C 0.103 3.897 17 H 0.083 0.917 18 N -0.844 5.844 19 C -0.075 4.075 20 H 0.060 0.940 21 C 0.144 3.856 22 H 0.251 0.749 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.334 0.666 32 H 0.332 0.668 33 H 0.015 0.985 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.199 -11.599 0.157 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.061 3.939 11 C -0.131 4.131 12 H 0.077 0.923 13 C -0.135 4.135 14 C -0.151 4.151 15 C -0.187 4.187 16 C -0.008 4.008 17 H 0.101 0.899 18 N -0.371 5.371 19 C -0.094 4.094 20 H 0.078 0.922 21 C 0.019 3.981 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.033 0.967 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.657 -10.786 0.188 11.110 hybrid contribution -0.387 0.246 -0.091 0.467 sum -3.044 -10.540 0.097 10.971 Atomic orbital electron populations 1.69970 1.04878 1.24877 1.57088 1.24802 0.95633 0.97666 1.02527 0.86138 0.78721 0.83747 0.77422 1.21761 1.21855 1.20639 1.19060 0.91014 0.82893 1.42291 0.90712 1.44424 1.08313 1.00097 1.80422 1.21191 0.85676 0.89168 0.97894 1.21359 0.93298 0.99158 0.99299 0.92303 1.20762 0.96444 1.00046 0.96238 1.21371 0.97479 0.98844 0.97455 1.22263 0.97666 0.98576 1.00175 1.21069 0.88105 0.94306 0.97353 0.89870 1.58946 1.53145 1.17566 1.07463 1.21203 0.96744 0.97202 0.94293 0.92178 1.21451 0.93525 0.85114 0.98057 0.93912 0.95104 0.92754 0.93462 0.91886 0.92672 0.91125 0.92688 0.92703 0.85372 0.85560 0.96735 0.94820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.65 10.60 55.49 0.59 -27.06 16 2 C -0.01 -0.29 5.42 -17.43 -0.09 -0.39 16 3 Si 0.91 22.72 29.56 -169.99 -5.03 17.69 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.50 10.23 -15.06 -0.15 -6.66 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.61 -16.18 3.40 -170.70 -0.58 -16.76 16 10 C 0.19 4.59 4.78 -3.15 -0.02 4.58 16 11 C -0.11 -2.14 2.76 -91.54 -0.25 -2.39 16 12 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.10 -1.55 5.24 -28.04 -0.15 -1.70 16 14 C -0.11 -1.68 5.90 -26.91 -0.16 -1.84 16 15 C -0.15 -2.00 5.44 -27.00 -0.15 -2.15 16 16 C 0.10 1.65 2.40 -68.72 -0.17 1.49 16 17 H 0.08 1.62 7.82 -51.93 -0.41 1.21 16 18 N -0.84 -11.55 9.19 -5.53 -0.05 -11.60 16 19 C -0.08 -1.37 2.67 -90.77 -0.24 -1.61 16 20 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 21 C 0.14 3.24 6.69 -2.92 -0.02 3.22 16 22 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.03 0.83 6.98 -51.93 -0.36 0.47 16 24 H 0.05 1.50 7.20 -51.93 -0.37 1.13 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.20 7.43 -51.93 -0.39 0.81 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.33 3.90 8.99 -39.29 -0.35 3.55 16 32 H 0.33 3.97 8.83 -39.29 -0.35 3.62 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.03 0.79 7.60 -51.93 -0.39 0.39 16 LS Contribution 261.43 15.07 3.94 3.94 Total: -1.00 -30.67 261.43 -8.06 -38.73 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.54 Total: 2.52 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.40 Total: -7.45 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.04 Total: -55.43 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.67 -8.06 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228544727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.741 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds