Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99664 * 2 1 4 4 H 1.48496 * 109.47487 * 274.41651 * 3 2 1 5 5 H 1.48500 * 109.47024 * 34.42004 * 3 2 1 6 6 H 1.48506 * 109.46962 * 154.41875 * 3 2 1 7 7 C 1.38810 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99666 * 188.70655 * 7 2 1 9 9 N 1.36932 * 120.00196 * 8.43123 * 7 2 1 10 10 C 1.47180 * 125.40665 * 9.38283 * 9 7 2 11 11 C 1.53989 * 105.51541 * 161.60971 * 10 9 7 12 12 H 1.09005 * 107.52032 * 276.22263 * 11 10 9 13 13 C 1.50958 * 111.67864 * 156.72580 * 11 10 9 14 14 C 1.52450 * 113.05407 * 283.25518 * 13 11 10 15 15 C 1.53206 * 108.43406 * 303.39063 * 14 13 11 16 16 C 1.52270 * 108.68345 * 64.92430 * 15 14 13 17 17 H 1.09004 * 108.91490 * 61.44835 * 16 15 14 18 18 N 1.46902 * 108.84374 * 180.02562 * 16 15 14 19 19 C 1.51753 * 112.28769 * 300.72369 * 16 15 14 20 20 H 1.09005 * 109.91038 * 279.72021 * 19 16 15 21 21 C 1.46927 * 125.41020 * 189.68868 * 9 7 2 22 22 H 0.96997 * 120.00222 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.22218 * 280.74839 * 10 9 7 24 24 H 1.08997 * 110.22548 * 42.68078 * 10 9 7 25 25 H 1.08999 * 108.38155 * 162.49960 * 13 11 10 26 26 H 1.09001 * 108.80634 * 44.30873 * 13 11 10 27 27 H 1.08993 * 109.64305 * 183.70735 * 14 13 11 28 28 H 1.08998 * 109.81557 * 63.17690 * 14 13 11 29 29 H 1.09000 * 109.60432 * 305.16114 * 15 14 13 30 30 H 1.08997 * 109.73224 * 184.76455 * 15 14 13 31 31 H 1.00897 * 111.00090 * 302.72863 * 18 16 15 32 32 H 1.00902 * 110.99853 * 66.67864 * 18 16 15 33 33 H 1.08997 * 109.87809 * 298.41885 * 21 9 7 34 34 H 1.08994 * 109.87669 * 59.57356 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4043 2.1005 -1.3958 5 1 1.4973 2.6239 0.7914 6 1 3.5913 1.4151 0.6046 7 6 2.0102 -1.2021 -0.0005 8 1 3.0809 -1.2075 0.1410 9 7 1.3367 -2.3815 -0.1749 10 6 -0.0773 -2.5066 -0.5635 11 6 -0.2368 -3.9488 -1.0793 12 1 0.0730 -3.9596 -2.1244 13 6 -1.6682 -4.4190 -0.9868 14 6 -2.0821 -4.7967 0.4310 15 6 -1.1196 -5.8714 0.9466 16 6 0.2734 -5.2664 1.0566 17 1 0.2460 -4.4439 1.7714 18 7 1.1995 -6.2944 1.5503 19 6 0.7811 -4.7446 -0.2749 20 1 1.1656 -5.5696 -0.8746 21 6 1.9092 -3.7230 0.0023 22 1 -0.4850 0.8400 0.0004 23 1 -0.7215 -2.3393 0.2997 24 1 -0.3149 -1.7959 -1.3550 25 1 -1.7864 -5.2897 -1.6318 26 1 -2.3229 -3.6245 -1.3449 27 1 -3.0991 -5.1887 0.4237 28 1 -2.0320 -3.9198 1.0765 29 1 -1.1003 -6.7096 0.2501 30 1 -1.4462 -6.2182 1.9270 31 1 0.8906 -6.6636 2.4370 32 1 1.3154 -7.0324 0.8720 33 1 2.7266 -3.8733 -0.7029 34 1 2.2719 -3.8393 1.0235 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228544727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = -13.567885 kcal Electronic energy + Delta-G solvation = -14816.621428 eV Core-core repulsion = 12555.031633 eV Total energy + Delta-G solvation = -2261.589795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.89413 -36.90634 -34.76236 -33.96623 -31.04842 -29.80446 -27.46753 -26.60856 -23.14248 -22.82561 -21.73374 -19.59645 -18.84828 -17.04848 -16.58478 -16.48174 -15.62792 -15.32055 -15.12289 -14.69940 -14.10125 -13.79280 -13.59736 -13.50231 -12.95206 -12.83035 -12.57118 -12.28048 -12.18055 -11.94111 -11.83165 -11.76679 -11.38460 -11.03289 -10.84964 -10.64379 -9.42429 -8.82966 -7.87516 -5.22135 1.43207 1.45585 1.54842 2.49007 3.29663 3.55252 3.71057 3.73083 3.95566 4.10698 4.23846 4.30081 4.37877 4.53248 4.64696 4.69390 4.84164 4.88460 5.02366 5.11878 5.15787 5.20283 5.32052 5.37289 5.44578 5.50836 5.62151 5.68856 5.82718 6.21122 6.35935 6.76451 7.10459 7.79292 8.45111 9.23968 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044833 B = 0.009795 C = 0.008795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.391805 B = 2858.060474 C = 3183.034545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.628 5.628 10 C 0.196 3.804 11 C -0.098 4.098 12 H 0.059 0.941 13 C -0.095 4.095 14 C -0.113 4.113 15 C -0.136 4.136 16 C 0.111 3.889 17 H 0.039 0.961 18 N -0.848 5.848 19 C -0.064 4.064 20 H 0.090 0.910 21 C 0.140 3.860 22 H 0.247 0.753 23 H -0.001 1.001 24 H 0.014 0.986 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.348 0.652 32 H 0.348 0.652 33 H 0.015 0.985 34 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 -13.685 -0.136 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.071 3.929 11 C -0.118 4.118 12 H 0.077 0.923 13 C -0.133 4.133 14 C -0.151 4.151 15 C -0.176 4.176 16 C -0.001 4.001 17 H 0.057 0.943 18 N -0.379 5.379 19 C -0.083 4.083 20 H 0.108 0.892 21 C 0.015 3.985 22 H 0.057 0.943 23 H 0.017 0.983 24 H 0.032 0.968 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.033 0.967 34 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.714 -12.911 -0.102 13.194 hybrid contribution -0.319 0.901 0.022 0.956 sum -3.033 -12.010 -0.080 12.387 Atomic orbital electron populations 1.70186 1.06321 1.25342 1.57805 1.25684 0.96598 1.01099 1.02485 0.85062 0.77817 0.79076 0.77399 1.21247 1.21853 1.19332 1.19430 0.91426 0.84392 1.42363 0.90737 1.44769 1.09137 1.01148 1.80410 1.20952 0.84409 0.92186 0.95344 1.21284 0.96097 0.95439 0.98979 0.92286 1.20764 0.93563 1.01061 0.97871 1.21376 0.99641 0.98208 0.95923 1.22180 0.94995 0.98451 1.01936 1.20780 0.90446 0.94009 0.94817 0.94253 1.58793 1.52671 1.17807 1.08620 1.21166 0.94695 0.96572 0.95857 0.89201 1.21604 0.95148 0.84562 0.97201 0.94349 0.98301 0.96766 0.89892 0.92865 0.89722 0.94519 0.90016 0.90866 0.83806 0.83833 0.96706 0.96094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 10.60 21.65 0.23 -59.06 16 2 C -0.07 -3.91 5.42 84.86 0.46 -3.45 16 3 Si 0.98 47.68 29.56 68.60 2.03 49.71 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.25 -14.80 10.23 84.03 0.86 -13.94 16 8 H 0.07 4.33 7.84 -2.91 -0.02 4.31 16 9 N -0.63 -34.75 3.40 -693.96 -2.36 -37.11 16 10 C 0.20 10.14 4.78 86.58 0.41 10.55 16 11 C -0.10 -3.71 2.76 -11.39 -0.03 -3.74 16 12 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 13 C -0.09 -2.84 5.24 29.75 0.16 -2.69 16 14 C -0.11 -3.12 5.90 30.48 0.18 -2.94 16 15 C -0.14 -3.23 5.44 30.42 0.17 -3.07 16 16 C 0.11 3.39 2.40 44.26 0.11 3.50 16 17 H 0.04 1.55 7.82 -2.38 -0.02 1.54 16 18 N -0.85 -20.96 9.19 -171.39 -1.57 -22.54 16 19 C -0.06 -2.23 2.67 -10.89 -0.03 -2.26 16 20 H 0.09 2.67 7.94 -2.38 -0.02 2.65 16 21 C 0.14 6.34 6.69 86.88 0.58 6.92 16 22 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 23 H 0.00 -0.06 6.98 -2.39 -0.02 -0.07 16 24 H 0.01 0.82 7.20 -2.39 -0.02 0.80 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.70 8.06 -2.39 -0.02 1.68 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.25 7.43 -2.39 -0.02 1.23 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.35 7.14 8.99 -89.70 -0.81 6.33 16 32 H 0.35 6.93 8.83 -89.69 -0.79 6.13 16 33 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.02 1.00 7.60 -2.39 -0.02 0.98 16 Total: -1.00 -69.41 261.43 0.67 -68.74 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.51 Total: 11.36 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 2.86 Total: -11.11 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.70 Total: -118.70 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -69.41 0.67 -68.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228544727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.172 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds