Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00149 * 2 1 4 4 N 1.46902 * 109.47075 * 95.00697 * 3 2 1 5 5 C 1.50697 * 120.00008 * 180.02562 * 2 1 3 6 6 N 1.46906 * 109.47221 * 94.99301 * 5 2 1 7 7 C 1.46902 * 111.00055 * 189.99869 * 6 5 2 8 8 C 1.50700 * 109.47143 * 162.80872 * 7 6 5 9 9 H 1.07997 * 119.99939 * 4.65785 * 8 7 6 10 10 C 1.37877 * 119.99996 * 184.65711 * 8 7 6 11 11 N 1.31522 * 119.99973 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99826 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47434 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47035 * 120.00329 * 12 10 8 15 15 H 1.48504 * 109.47037 * 240.00063 * 12 10 8 16 16 C 1.46900 * 111.00059 * 66.04638 * 6 5 2 17 17 C 1.53000 * 117.49805 * 127.53219 * 16 6 5 18 18 C 1.52999 * 60.00078 * 252.51223 * 17 16 6 19 19 H 1.08006 * 119.99882 * 179.97438 * 1 2 3 20 20 H 1.07995 * 120.00133 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47530 * 215.00843 * 3 2 1 22 22 H 1.09007 * 109.47419 * 335.00796 * 3 2 1 23 23 H 1.00901 * 111.00198 * 180.02562 * 4 3 2 24 24 H 1.00903 * 110.99877 * 303.95858 * 4 3 2 25 25 H 1.09002 * 109.47083 * 214.99137 * 5 2 1 26 26 H 1.08995 * 109.47449 * 334.99682 * 5 2 1 27 27 H 1.08997 * 109.47315 * 282.80887 * 7 6 5 28 28 H 1.09003 * 109.47005 * 42.80819 * 7 6 5 29 29 H 0.96994 * 119.99811 * 179.97438 * 11 10 8 30 30 H 1.08999 * 115.55081 * 273.24206 * 16 6 5 31 31 H 1.08999 * 117.50028 * 0.02562 * 17 16 6 32 32 H 1.09003 * 117.49525 * 145.02763 * 17 16 6 33 33 H 1.09007 * 117.49888 * 252.51267 * 18 17 16 34 34 H 1.08998 * 117.52070 * 107.48580 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.4130 1.6686 1.3797 5 6 2.0635 -1.3051 -0.0006 6 7 2.4127 -1.6683 -1.3805 7 6 2.9352 -3.0396 -1.4478 8 6 2.8849 -3.5270 -2.8729 9 1 2.5741 -2.8580 -3.6617 10 6 3.2356 -4.8270 -3.1697 11 7 3.6136 -5.6418 -2.2090 12 14 3.1725 -5.4312 -4.9361 13 1 2.7167 -4.3289 -5.8205 14 1 4.5258 -5.8759 -5.3558 15 1 2.2243 -6.5697 -5.0363 16 6 3.3707 -0.7114 -1.9504 17 6 4.6508 -1.2768 -2.5688 18 6 4.7094 -0.5383 -1.2302 19 1 -0.5400 -0.9354 -0.0004 20 1 -0.5400 0.9353 0.0004 21 1 2.9741 1.1989 -0.5895 22 1 1.4385 2.0855 -0.4342 23 1 2.9191 2.5412 1.4066 24 1 1.5902 1.7100 1.9622 25 1 2.9743 -1.1990 0.5888 26 1 1.4387 -2.0856 0.4334 27 1 3.9666 -3.0532 -1.0954 28 1 2.3279 -3.6910 -0.8193 29 1 3.8600 -6.5564 -2.4178 30 1 2.9327 0.1706 -2.4175 31 1 4.7821 -2.3588 -2.5532 32 1 5.0553 -0.7667 -3.4431 33 1 5.1524 0.4577 -1.2238 34 1 4.8793 -1.1340 -0.3333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231609678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 54.442105 kcal Electronic energy + Delta-G solvation = -14280.013553 eV Core-core repulsion = 12021.372893 eV Total energy + Delta-G solvation = -2258.640660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.57147 -35.93792 -33.12876 -32.53688 -30.89838 -27.37796 -24.75343 -24.38131 -22.59213 -21.45426 -19.13417 -17.96868 -16.27438 -15.95453 -15.64221 -14.78452 -14.63832 -14.20915 -13.77714 -13.38417 -13.12897 -12.36973 -12.02344 -11.58631 -11.43506 -11.00380 -10.84077 -10.72856 -10.46304 -10.17453 -9.87519 -9.70771 -9.37410 -9.21496 -8.82047 -8.58115 -8.40192 -7.13957 -5.99254 -3.98592 2.54361 3.33121 3.40890 3.46438 4.45939 4.61802 4.79453 5.05589 5.16734 5.24695 5.37223 5.65764 5.70172 5.75293 5.77841 5.98604 6.14214 6.22555 6.27964 6.39822 6.63650 6.76863 6.88803 7.05939 7.16882 7.25308 7.32650 7.43748 7.46696 7.87733 8.14276 8.26862 8.58067 9.09495 9.63588 11.11089 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044336 B = 0.008285 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.393030 B = 3378.920350 C = 3611.875000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C 0.089 3.911 4 N -0.843 5.843 5 C 0.092 3.908 6 N -0.501 5.501 7 C 0.186 3.814 8 C -0.493 4.493 9 H 0.065 0.935 10 C 0.053 3.947 11 N -0.900 5.900 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.039 3.961 17 C -0.175 4.175 18 C -0.226 4.226 19 H 0.100 0.900 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.024 0.976 23 H 0.337 0.663 24 H 0.337 0.663 25 H 0.039 0.961 26 H 0.070 0.930 27 H -0.003 1.003 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 12.170 3.988 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.096 4.096 3 C -0.040 4.040 4 N -0.372 5.372 5 C -0.036 4.036 6 N -0.223 5.223 7 C 0.061 3.939 8 C -0.532 4.532 9 H 0.083 0.917 10 C -0.148 4.148 11 N -0.540 5.540 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.071 4.071 17 C -0.212 4.212 18 C -0.265 4.265 19 H 0.119 0.881 20 H 0.105 0.895 21 H 0.106 0.894 22 H 0.042 0.958 23 H 0.149 0.851 24 H 0.149 0.851 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.014 0.986 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.872 11.306 3.726 12.050 hybrid contribution 0.104 0.398 -0.632 0.754 sum -1.769 11.703 3.094 12.234 Atomic orbital electron populations 1.23622 0.95284 1.01266 1.02471 1.21577 0.94792 0.95209 0.98054 1.20993 0.99759 0.93406 0.89883 1.58675 1.29078 1.39060 1.10431 1.21045 0.98164 0.93214 0.91142 1.62269 1.40505 1.03870 1.15704 1.19881 0.93711 0.82320 0.97989 1.21169 1.43163 0.95924 0.92899 0.91726 1.24983 0.95812 0.96723 0.97295 1.69973 1.46140 1.06186 1.31721 0.86476 0.77470 0.78745 0.84975 1.19659 1.21186 1.21136 1.22505 0.84996 0.97612 1.01980 1.23553 0.99918 1.03423 0.94258 1.23306 1.04799 1.01055 0.97338 0.88143 0.89511 0.89396 0.95771 0.85075 0.85099 0.94317 0.91160 0.98566 0.95190 0.93047 0.88160 0.84900 0.90278 0.90299 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 13.88 29.01 0.40 -2.31 16 2 C -0.10 -1.51 4.75 -101.07 -0.48 -1.99 16 3 C 0.09 1.22 6.74 -4.98 -0.03 1.18 16 4 N -0.84 -9.95 9.61 -11.41 -0.11 -10.06 16 5 C 0.09 1.75 5.04 -4.97 -0.03 1.72 16 6 N -0.50 -10.96 4.66 -229.51 -1.07 -12.03 16 7 C 0.19 4.81 4.27 -4.97 -0.02 4.79 16 8 C -0.49 -13.66 6.85 -34.44 -0.24 -13.90 16 9 H 0.06 1.82 7.80 -52.49 -0.41 1.41 16 10 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 12 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 C 0.04 0.76 4.20 -67.71 -0.28 0.48 16 17 C -0.17 -3.53 8.87 -26.73 -0.24 -3.76 16 18 C -0.23 -4.08 8.33 -26.73 -0.22 -4.31 16 19 H 0.10 1.50 7.99 -52.48 -0.42 1.08 16 20 H 0.09 1.07 7.99 -52.49 -0.42 0.65 16 21 H 0.09 1.30 5.11 -51.93 -0.27 1.03 16 22 H 0.02 0.30 7.99 -51.92 -0.41 -0.11 16 23 H 0.34 3.22 9.08 -39.29 -0.36 2.86 16 24 H 0.34 3.54 8.99 -39.29 -0.35 3.19 16 25 H 0.04 0.76 6.86 -51.93 -0.36 0.40 16 26 H 0.07 1.37 7.69 -51.93 -0.40 0.97 16 27 H 0.00 -0.09 6.02 -51.93 -0.31 -0.40 16 28 H 0.03 0.84 7.78 -51.93 -0.40 0.44 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.10 1.84 7.65 -51.93 -0.40 1.44 16 31 H 0.13 3.19 4.91 -51.93 -0.25 2.94 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.67 7.14 -51.93 -0.37 1.30 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -29.27 274.42 -7.68 -36.94 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.11 Total: 6.91 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.23 Total: -16.71 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.44 Total: -47.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.27 -7.68 -36.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231609678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.386 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds