Wall clock time and date at job start Mon Mar 30 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47368 * 240.00092 * 3 2 1 5 5 H 1.48497 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46788 * 120.00080 * 3 2 1 7 7 C 1.38816 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 200.69352 * 7 2 1 9 9 N 1.36939 * 119.99922 * 20.68884 * 7 2 1 10 10 C 1.46497 * 120.00061 * 38.04067 * 9 7 2 11 11 C 1.53006 * 109.47260 * 89.99458 * 10 9 7 12 12 H 1.08999 * 110.36653 * 294.10185 * 11 10 9 13 13 C 1.54381 * 110.50989 * 171.68699 * 11 10 9 14 14 C 1.54262 * 105.05928 * 217.31933 * 13 11 10 15 15 C 1.54388 * 105.06015 * 0.02562 * 14 13 11 16 16 N 1.48555 * 110.40689 * 56.45599 * 11 10 9 17 17 C 1.46499 * 120.00159 * 218.03487 * 9 7 2 18 18 C 1.53004 * 117.49519 * 14.00761 * 17 9 7 19 19 C 1.53003 * 117.49748 * 305.34885 * 17 9 7 20 20 H 0.97001 * 119.99531 * 354.96793 * 1 2 3 21 21 H 1.09003 * 109.47219 * 329.99919 * 10 9 7 22 22 H 1.08995 * 109.47047 * 209.99742 * 10 9 7 23 23 H 1.09003 * 110.32396 * 336.21122 * 13 11 10 24 24 H 1.08999 * 110.32242 * 98.32072 * 13 11 10 25 25 H 1.09001 * 110.32323 * 118.89183 * 14 13 11 26 26 H 1.08996 * 110.32351 * 241.00598 * 14 13 11 27 27 H 1.09002 * 110.40795 * 265.07332 * 15 14 13 28 28 H 1.08993 * 110.40923 * 142.62839 * 15 14 13 29 29 H 1.00900 * 111.00206 * 277.93029 * 16 11 10 30 30 H 1.08991 * 115.55460 * 159.67583 * 17 9 7 31 31 H 1.09001 * 117.50284 * 359.97438 * 18 17 9 32 32 H 1.08997 * 117.49794 * 145.02402 * 18 17 9 33 33 H 1.08999 * 117.49768 * 214.97623 * 19 17 9 34 34 H 1.08995 * 117.49842 * 359.97391 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0379 -1.2325 0.3300 9 7 1.3917 -2.3497 -0.4200 10 6 0.4627 -2.3092 -1.5520 11 6 1.2318 -2.5527 -2.8521 12 1 1.9222 -1.7314 -3.0439 13 6 0.2545 -2.7220 -4.0351 14 6 0.8894 -3.8088 -4.9271 15 6 2.1966 -4.2051 -4.2075 16 7 1.9662 -3.8424 -2.7856 17 6 1.6591 -3.6178 0.2631 18 6 2.3649 -3.5545 1.6191 19 6 3.1188 -4.0596 0.3863 20 1 -0.4849 0.8369 0.0737 21 1 -0.0187 -1.3320 -1.5923 22 1 -0.2952 -3.0827 -1.4279 23 1 -0.7213 -3.0493 -3.6763 24 1 0.1604 -1.7858 -4.5853 25 1 0.2252 -4.6694 -5.0060 26 1 1.1067 -3.4070 -5.9167 27 1 3.0383 -3.6425 -4.6112 28 1 2.3733 -5.2764 -4.3031 29 1 2.8405 -3.7357 -2.2934 30 1 0.9082 -4.3951 0.1224 31 1 2.6306 -2.5694 2.0028 32 1 2.0785 -4.2905 2.3704 33 1 3.3279 -5.1277 0.3271 34 1 3.8800 -3.4071 -0.0412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236207890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:49 Heat of formation + Delta-G solvation = 45.501929 kcal Electronic energy + Delta-G solvation = -14633.881544 eV Core-core repulsion = 12374.853208 eV Total energy + Delta-G solvation = -2259.028335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.11296 -36.48916 -33.35852 -30.89376 -29.61511 -28.47841 -24.92098 -23.09714 -21.28946 -20.45341 -19.73915 -19.39239 -16.27049 -16.09839 -15.41105 -14.52502 -14.29217 -13.88052 -13.29127 -12.79899 -12.40045 -11.81473 -11.57222 -11.45198 -11.08527 -10.88467 -10.84703 -10.78893 -10.49574 -10.36749 -10.11248 -9.95050 -9.76406 -9.46440 -9.10008 -8.40548 -7.86307 -6.38139 -5.78845 -3.35422 3.34275 3.40378 3.42230 4.44010 4.90061 5.08834 5.12370 5.30354 5.39619 5.45660 5.53166 5.83687 5.97582 6.08010 6.14174 6.24808 6.27645 6.30986 6.42558 6.48128 6.59490 6.62348 6.77068 6.86098 7.05196 7.14429 7.28955 7.46471 7.71662 7.84166 8.07417 8.55029 9.21326 9.84475 10.43413 11.20821 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.012735 C = 0.009819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.722579 B = 2198.192019 C = 2851.038869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.015 3.985 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.261 4.261 8 H 0.059 0.941 9 N -0.549 5.549 10 C 0.167 3.833 11 C 0.050 3.950 12 H 0.040 0.960 13 C -0.119 4.119 14 C -0.121 4.121 15 C 0.032 3.968 16 N -0.651 5.651 17 C 0.148 3.852 18 C -0.206 4.206 19 C -0.225 4.225 20 H 0.257 0.743 21 H 0.096 0.904 22 H 0.031 0.969 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.339 0.661 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -5.753 -6.172 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.185 4.185 3 Si 0.727 3.273 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.391 4.391 8 H 0.077 0.923 9 N -0.264 5.264 10 C 0.040 3.960 11 C -0.062 4.062 12 H 0.058 0.942 13 C -0.158 4.158 14 C -0.160 4.160 15 C -0.098 4.098 16 N -0.281 5.281 17 C 0.038 3.962 18 C -0.245 4.245 19 C -0.266 4.266 20 H 0.067 0.933 21 H 0.114 0.886 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.310 -6.012 -6.090 8.657 hybrid contribution 1.359 1.543 -0.229 2.068 sum 2.668 -4.469 -6.319 8.187 Atomic orbital electron populations 1.69888 1.05530 1.26099 1.51549 1.25217 0.95072 0.98601 0.99629 0.86453 0.79176 0.83374 0.78284 1.20954 1.21557 1.20717 1.18898 0.94089 0.85010 1.41057 0.92312 1.43338 1.50437 1.02172 1.30479 1.20949 0.90229 1.01946 0.82865 1.23235 0.95572 0.89917 0.97445 0.94185 1.22300 0.99636 0.97708 0.96191 1.22253 0.96928 0.98906 0.97873 1.22866 0.96041 0.99878 0.91009 1.63671 1.24636 1.30061 1.09703 1.20976 0.91171 0.90494 0.93585 1.23115 1.07731 1.01800 0.91869 1.23282 1.00151 0.98677 1.04479 0.93303 0.88625 0.95077 0.91394 0.92303 0.91790 0.92447 0.95472 0.91331 0.84429 0.89497 0.88630 0.91111 0.91098 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 11.45 55.49 0.64 -24.56 16 2 C 0.02 0.41 4.97 -17.43 -0.09 0.33 16 3 Si 0.90 21.41 29.60 -169.99 -5.03 16.38 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -6.97 8.04 -15.06 -0.12 -7.09 16 8 H 0.06 1.59 7.23 -52.49 -0.38 1.21 16 9 N -0.55 -13.45 2.67 -165.66 -0.44 -13.89 16 10 C 0.17 3.88 5.05 -4.04 -0.02 3.86 16 11 C 0.05 1.00 3.46 -66.07 -0.23 0.77 16 12 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.12 -2.00 6.55 -25.35 -0.17 -2.17 16 14 C -0.12 -1.74 7.00 -25.34 -0.18 -1.92 16 15 C 0.03 0.49 7.47 -2.19 -0.02 0.47 16 16 N -0.65 -11.91 6.49 -102.76 -0.67 -12.57 16 17 C 0.15 3.23 5.74 -67.93 -0.39 2.84 16 18 C -0.21 -4.28 9.81 -26.69 -0.26 -4.54 16 19 C -0.22 -4.38 9.31 -26.69 -0.25 -4.62 16 20 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 21 H 0.10 2.51 5.52 -51.93 -0.29 2.22 16 22 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 23 H 0.07 1.14 7.77 -51.93 -0.40 0.73 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.34 6.47 7.89 -39.29 -0.31 6.16 16 30 H 0.09 1.86 8.10 -51.93 -0.42 1.44 16 31 H 0.10 2.19 6.95 -51.93 -0.36 1.83 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.62 8.00 -51.93 -0.42 1.20 16 LS Contribution 271.76 15.07 4.10 4.10 Total: -1.00 -27.39 271.76 -8.63 -36.03 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.50 Total: 6.60 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.72 Total: -12.07 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.47 Total: -51.03 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.39 -8.63 -36.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236207890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.528 kcal (2) G-P(sol) polarization free energy of solvation -27.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds