Wall clock time and date at job start Mon Mar 30 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47368 * 240.00092 * 3 2 1 5 5 H 1.48497 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46788 * 120.00080 * 3 2 1 7 7 C 1.38816 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 200.69352 * 7 2 1 9 9 N 1.36939 * 119.99922 * 20.68884 * 7 2 1 10 10 C 1.46497 * 120.00061 * 38.04067 * 9 7 2 11 11 C 1.53006 * 109.47260 * 89.99458 * 10 9 7 12 12 H 1.08999 * 110.36653 * 294.10185 * 11 10 9 13 13 C 1.54381 * 110.50989 * 171.68699 * 11 10 9 14 14 C 1.54262 * 105.05928 * 217.31933 * 13 11 10 15 15 C 1.54388 * 105.06015 * 0.02562 * 14 13 11 16 16 N 1.48555 * 110.40689 * 56.45599 * 11 10 9 17 17 C 1.46499 * 120.00159 * 218.03487 * 9 7 2 18 18 C 1.53004 * 117.49519 * 14.00761 * 17 9 7 19 19 C 1.53003 * 117.49748 * 305.34885 * 17 9 7 20 20 H 0.97001 * 119.99531 * 354.96793 * 1 2 3 21 21 H 1.09003 * 109.47219 * 329.99919 * 10 9 7 22 22 H 1.08995 * 109.47047 * 209.99742 * 10 9 7 23 23 H 1.09003 * 110.32396 * 336.21122 * 13 11 10 24 24 H 1.08999 * 110.32242 * 98.32072 * 13 11 10 25 25 H 1.09001 * 110.32323 * 118.89183 * 14 13 11 26 26 H 1.08996 * 110.32351 * 241.00598 * 14 13 11 27 27 H 1.09002 * 110.40795 * 265.07332 * 15 14 13 28 28 H 1.08993 * 110.40923 * 142.62839 * 15 14 13 29 29 H 1.00900 * 111.00206 * 277.93029 * 16 11 10 30 30 H 1.08991 * 115.55460 * 159.67583 * 17 9 7 31 31 H 1.09001 * 117.50284 * 359.97438 * 18 17 9 32 32 H 1.08997 * 117.49794 * 145.02402 * 18 17 9 33 33 H 1.08999 * 117.49768 * 214.97623 * 19 17 9 34 34 H 1.08995 * 117.49842 * 359.97391 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0379 -1.2325 0.3300 9 7 1.3917 -2.3497 -0.4200 10 6 0.4627 -2.3092 -1.5520 11 6 1.2318 -2.5527 -2.8521 12 1 1.9222 -1.7314 -3.0439 13 6 0.2545 -2.7220 -4.0351 14 6 0.8894 -3.8088 -4.9271 15 6 2.1966 -4.2051 -4.2075 16 7 1.9662 -3.8424 -2.7856 17 6 1.6591 -3.6178 0.2631 18 6 2.3649 -3.5545 1.6191 19 6 3.1188 -4.0596 0.3863 20 1 -0.4849 0.8369 0.0737 21 1 -0.0187 -1.3320 -1.5923 22 1 -0.2952 -3.0827 -1.4279 23 1 -0.7213 -3.0493 -3.6763 24 1 0.1604 -1.7858 -4.5853 25 1 0.2252 -4.6694 -5.0060 26 1 1.1067 -3.4070 -5.9167 27 1 3.0383 -3.6425 -4.6112 28 1 2.3733 -5.2764 -4.3031 29 1 2.8405 -3.7357 -2.2934 30 1 0.9082 -4.3951 0.1224 31 1 2.6306 -2.5694 2.0028 32 1 2.0785 -4.2905 2.3704 33 1 3.3279 -5.1277 0.3271 34 1 3.8800 -3.4071 -0.0412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236207890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:49 Heat of formation + Delta-G solvation = 28.958852 kcal Electronic energy + Delta-G solvation = -14634.598905 eV Core-core repulsion = 12374.853208 eV Total energy + Delta-G solvation = -2259.745697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.63806 -38.13655 -35.22029 -32.76561 -30.96220 -30.11675 -26.80382 -24.79968 -22.91509 -21.75991 -21.56403 -20.93776 -18.19899 -17.54145 -17.20687 -16.23510 -15.87158 -15.63756 -14.80977 -14.58708 -13.76144 -13.50454 -13.26590 -12.96501 -12.79552 -12.68561 -12.58301 -12.21558 -12.11441 -12.04032 -11.88262 -11.52067 -11.40201 -11.20743 -10.81065 -10.40561 -9.32779 -8.35732 -7.80296 -5.42442 1.42730 1.44966 1.51332 2.46977 3.17321 3.45598 3.53536 3.62105 4.00037 4.04940 4.26112 4.39986 4.42571 4.60123 4.61811 4.76447 4.82543 4.95136 5.00607 5.04295 5.06918 5.12477 5.28119 5.33024 5.35119 5.45521 5.60635 5.63747 5.76065 6.12684 6.47533 6.59584 7.18781 7.90682 8.43411 9.13728 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.012735 C = 0.009819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.722579 B = 2198.192019 C = 2851.038869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.033 4.033 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.051 0.949 9 N -0.563 5.563 10 C 0.171 3.829 11 C 0.058 3.942 12 H 0.013 0.987 13 C -0.119 4.119 14 C -0.113 4.113 15 C 0.031 3.969 16 N -0.655 5.655 17 C 0.125 3.875 18 C -0.208 4.208 19 C -0.193 4.193 20 H 0.253 0.747 21 H 0.063 0.937 22 H 0.025 0.975 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.333 0.667 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -7.049 -7.131 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.230 4.230 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.069 0.931 9 N -0.279 5.279 10 C 0.045 3.955 11 C -0.054 4.054 12 H 0.031 0.969 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.099 4.099 16 N -0.284 5.284 17 C 0.016 3.984 18 C -0.247 4.247 19 C -0.234 4.234 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.044 0.956 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.149 0.851 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.201 -7.335 -7.055 10.413 hybrid contribution 1.097 1.863 0.093 2.164 sum 3.298 -5.472 -6.962 9.449 Atomic orbital electron populations 1.70021 1.06711 1.26344 1.53162 1.25843 0.95739 1.01295 1.00156 0.85544 0.77950 0.79946 0.78236 1.20701 1.21686 1.20275 1.19006 0.93802 0.86126 1.40114 0.93133 1.43467 1.50552 1.02565 1.31360 1.20788 0.90414 0.99878 0.84405 1.22941 0.95604 0.90066 0.96826 0.96912 1.22283 0.98806 0.99181 0.95476 1.22253 0.96330 0.98422 0.98132 1.22996 0.96741 1.01162 0.88972 1.63632 1.24284 1.28494 1.11959 1.21126 0.92921 0.89745 0.94596 1.23120 1.07828 1.01350 0.92366 1.23189 0.97797 1.00077 1.02314 0.93746 0.91901 0.95607 0.91633 0.91768 0.90408 0.90221 0.94967 0.89297 0.85146 0.88943 0.91301 0.88532 0.88020 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.51 11.45 21.65 0.25 -53.26 16 2 C -0.03 -1.82 4.97 84.86 0.42 -1.40 16 3 Si 0.96 44.72 29.60 68.60 2.03 46.75 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.26 -14.13 8.04 84.03 0.68 -13.45 16 8 H 0.05 2.79 7.23 -2.91 -0.02 2.77 16 9 N -0.56 -27.93 2.67 -678.03 -1.81 -29.74 16 10 C 0.17 8.16 5.05 86.38 0.44 8.59 16 11 C 0.06 2.30 3.46 45.07 0.16 2.45 16 12 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 13 C -0.12 -3.83 6.55 31.49 0.21 -3.62 16 14 C -0.11 -2.90 7.00 31.49 0.22 -2.68 16 15 C 0.03 0.84 7.47 86.46 0.65 1.49 16 16 N -0.65 -23.00 6.49 -479.03 -3.11 -26.11 16 17 C 0.12 5.37 5.74 44.99 0.26 5.63 16 18 C -0.21 -8.38 9.81 30.62 0.30 -8.08 16 19 C -0.19 -7.14 9.31 30.62 0.29 -6.85 16 20 H 0.25 14.29 8.32 -92.71 -0.77 13.52 16 21 H 0.06 3.43 5.52 -2.39 -0.01 3.42 16 22 H 0.03 1.21 7.91 -2.39 -0.02 1.19 16 23 H 0.06 2.14 7.77 -2.39 -0.02 2.12 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 29 H 0.33 12.28 7.89 -89.69 -0.71 11.57 16 30 H 0.09 3.85 8.10 -2.39 -0.02 3.84 16 31 H 0.07 3.16 6.95 -2.39 -0.02 3.14 16 32 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.07 2.69 8.00 -2.39 -0.02 2.67 16 Total: -1.00 -58.99 271.76 1.33 -57.66 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.36 Total: 22.62 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 3.61 Total: -17.93 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.67 Total: -109.11 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -58.99 1.33 -57.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236207890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.622 kcal (2) G-P(sol) polarization free energy of solvation -58.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds