Wall clock time and date at job start Mon Mar 30 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 119.99984 * 2 1 4 4 H 1.48496 * 109.47334 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47027 * 300.00184 * 3 2 1 6 6 H 1.48501 * 109.46863 * 59.99845 * 3 2 1 7 7 C 1.38815 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99282 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99679 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.54240 * 36.16114 * 10 9 7 12 12 C 1.54997 * 110.48881 * 273.54736 * 10 9 7 13 13 C 1.55191 * 105.02292 * 243.87064 * 12 10 9 14 14 N 1.47094 * 103.52574 * 23.94141 * 13 12 10 15 15 C 1.45664 * 116.53603 * 197.57630 * 14 13 12 16 16 C 1.52329 * 108.49912 * 182.14130 * 15 14 13 17 17 C 1.52826 * 110.81028 * 303.06353 * 16 15 14 18 18 C 1.53659 * 110.61008 * 53.46528 * 17 16 15 19 19 C 1.48721 * 103.70052 * 317.76333 * 14 13 12 20 20 H 1.08996 * 110.34398 * 286.14987 * 19 14 13 21 21 H 0.97006 * 120.00030 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99973 * 359.97438 * 9 7 2 23 23 H 1.09002 * 110.35044 * 124.95046 * 12 10 9 24 24 H 1.09003 * 110.34719 * 2.78594 * 12 10 9 25 25 H 1.09006 * 110.61289 * 142.45384 * 13 12 10 26 26 H 1.09005 * 110.61129 * 265.42736 * 13 12 10 27 27 H 1.08998 * 109.79762 * 302.25407 * 15 14 13 28 28 H 1.09004 * 109.79636 * 63.10014 * 15 14 13 29 29 H 1.09000 * 109.40549 * 182.56347 * 16 15 14 30 30 H 1.09003 * 108.94984 * 63.26004 * 16 15 14 31 31 H 1.08997 * 109.24675 * 293.17104 * 17 16 15 32 32 H 1.08998 * 109.24904 * 173.75575 * 17 16 15 33 33 H 1.09001 * 109.83552 * 184.35122 * 18 17 16 34 34 H 1.09003 * 109.89040 * 63.42879 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 2.9625 -3.5761 0.6014 12 6 2.4083 -4.0809 -1.4507 13 6 1.6327 -5.4053 -1.6806 14 7 0.5247 -5.3270 -0.7164 15 6 -0.1558 -6.5765 -0.4040 16 6 -1.2949 -6.2781 0.5623 17 6 -0.7720 -5.5873 1.8212 18 6 0.0544 -4.3453 1.4531 19 6 1.1663 -4.7943 0.5150 20 1 1.7728 -5.5653 0.9902 21 1 -0.4850 0.8401 -0.0004 22 1 0.3556 -2.3880 -0.0016 23 1 3.4810 -4.2480 -1.5479 24 1 2.0781 -3.3206 -2.1585 25 1 1.2512 -5.4545 -2.7005 26 1 2.2683 -6.2645 -1.4659 27 1 -0.5512 -7.0200 -1.3178 28 1 0.5408 -7.2675 0.0709 29 1 -1.7862 -7.2100 0.8418 30 1 -2.0162 -5.6267 0.0687 31 1 -0.1457 -6.2833 2.3792 32 1 -1.6155 -5.2865 2.4427 33 1 0.4846 -3.9070 2.3537 34 1 -0.5793 -3.6133 0.9522 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250833942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:43 Heat of formation + Delta-G solvation = 12.765827 kcal Electronic energy + Delta-G solvation = -14644.447452 eV Core-core repulsion = 12383.999572 eV Total energy + Delta-G solvation = -2260.447879 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.54284 -35.09298 -33.58500 -31.65689 -29.49894 -28.60226 -26.04130 -23.23501 -22.64405 -21.18006 -19.99943 -18.78230 -17.15905 -15.46799 -15.04716 -14.63011 -14.17122 -14.02881 -13.32153 -13.15814 -12.81885 -12.67203 -12.08107 -11.65735 -11.50806 -10.93702 -10.79255 -10.77091 -10.54761 -10.39540 -10.19633 -10.06096 -9.89195 -9.68025 -9.46584 -8.84242 -7.94806 -6.83776 -5.68603 -2.95810 3.47394 3.53037 3.55208 4.38358 4.65759 5.04124 5.13139 5.19494 5.51330 5.53448 5.57851 5.69085 5.74457 5.76954 5.83987 5.93224 5.97591 6.06123 6.19032 6.35009 6.40611 6.42480 6.47830 6.60344 6.64826 6.75548 7.01759 7.08962 7.48753 7.69369 7.78367 8.50944 9.62361 10.23433 10.59740 11.54061 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043454 B = 0.009142 C = 0.008163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.206262 B = 3061.977728 C = 3429.249017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.183 3.817 11 H 0.051 0.949 12 C -0.147 4.147 13 C 0.047 3.953 14 N -0.518 5.518 15 C 0.057 3.943 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.097 4.097 19 C 0.060 3.940 20 H 0.040 0.960 21 H 0.253 0.747 22 H 0.390 0.610 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -12.757 0.717 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.071 3.929 11 H 0.069 0.931 12 C -0.188 4.188 13 C -0.081 4.081 14 N -0.243 5.243 15 C -0.071 4.071 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.135 4.135 19 C -0.049 4.049 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.226 0.774 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.261 -12.307 0.512 12.320 hybrid contribution 0.782 0.259 0.149 0.837 sum 1.044 -12.048 0.661 12.111 Atomic orbital electron populations 1.69679 1.05019 1.25325 1.57911 1.24713 0.95465 0.97507 1.03323 0.86163 0.78763 0.84451 0.77098 1.20674 1.22005 1.22012 1.19308 0.90980 0.84273 1.42199 0.91321 1.42460 1.06065 0.99070 1.87808 1.20756 0.93305 0.86274 0.92555 0.93094 1.23455 0.97597 0.95976 1.01774 1.22775 0.91560 0.97347 0.96399 1.63833 1.26681 1.25180 1.08610 1.21722 0.96139 0.90897 0.98382 1.21350 0.97909 1.00018 0.95931 1.21619 0.99607 0.97593 0.96906 1.21340 0.96762 0.96819 0.98619 1.22745 0.94851 0.96691 0.90587 0.94201 0.93682 0.77409 0.93018 0.90205 0.91205 0.95446 0.91420 0.95850 0.92372 0.91195 0.93193 0.92202 0.91610 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -18.09 4.66 -52.15 -0.24 -18.33 16 10 C 0.18 3.79 3.60 -66.62 -0.24 3.55 16 11 H 0.05 1.06 8.12 -51.93 -0.42 0.64 16 12 C -0.15 -2.75 6.84 -24.52 -0.17 -2.91 16 13 C 0.05 0.77 6.71 -2.56 -0.02 0.75 16 14 N -0.52 -8.90 4.86 -225.17 -1.09 -9.99 16 15 C 0.06 0.82 5.78 -4.84 -0.03 0.79 16 16 C -0.11 -1.55 6.02 -27.16 -0.16 -1.71 16 17 C -0.12 -1.72 5.95 -26.48 -0.16 -1.88 16 18 C -0.10 -1.74 5.09 -26.77 -0.14 -1.88 16 19 C 0.06 1.07 2.40 -66.82 -0.16 0.91 16 20 H 0.04 0.67 7.98 -51.93 -0.41 0.26 16 21 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.39 10.60 5.91 -40.82 -0.24 10.36 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.70 7.97 -51.93 -0.41 1.29 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.02 0.32 7.99 -51.93 -0.41 -0.10 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.77 6.48 -51.93 -0.34 1.43 16 LS Contribution 265.16 15.07 4.00 4.00 Total: -1.00 -29.59 265.16 -8.55 -38.14 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.59 Total: 5.89 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.32 Total: -9.64 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.61 Total: -55.97 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.59 -8.55 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250833942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.910 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds