Wall clock time and date at job start Mon Mar 30 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 119.99984 * 2 1 4 4 H 1.48496 * 109.47334 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47027 * 300.00184 * 3 2 1 6 6 H 1.48501 * 109.46863 * 59.99845 * 3 2 1 7 7 C 1.38815 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99282 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99679 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.54240 * 36.16114 * 10 9 7 12 12 C 1.54997 * 110.48881 * 273.54736 * 10 9 7 13 13 C 1.55191 * 105.02292 * 243.87064 * 12 10 9 14 14 N 1.47094 * 103.52574 * 23.94141 * 13 12 10 15 15 C 1.45664 * 116.53603 * 197.57630 * 14 13 12 16 16 C 1.52329 * 108.49912 * 182.14130 * 15 14 13 17 17 C 1.52826 * 110.81028 * 303.06353 * 16 15 14 18 18 C 1.53659 * 110.61008 * 53.46528 * 17 16 15 19 19 C 1.48721 * 103.70052 * 317.76333 * 14 13 12 20 20 H 1.08996 * 110.34398 * 286.14987 * 19 14 13 21 21 H 0.97006 * 120.00030 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99973 * 359.97438 * 9 7 2 23 23 H 1.09002 * 110.35044 * 124.95046 * 12 10 9 24 24 H 1.09003 * 110.34719 * 2.78594 * 12 10 9 25 25 H 1.09006 * 110.61289 * 142.45384 * 13 12 10 26 26 H 1.09005 * 110.61129 * 265.42736 * 13 12 10 27 27 H 1.08998 * 109.79762 * 302.25407 * 15 14 13 28 28 H 1.09004 * 109.79636 * 63.10014 * 15 14 13 29 29 H 1.09000 * 109.40549 * 182.56347 * 16 15 14 30 30 H 1.09003 * 108.94984 * 63.26004 * 16 15 14 31 31 H 1.08997 * 109.24675 * 293.17104 * 17 16 15 32 32 H 1.08998 * 109.24904 * 173.75575 * 17 16 15 33 33 H 1.09001 * 109.83552 * 184.35122 * 18 17 16 34 34 H 1.09003 * 109.89040 * 63.42879 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 2.9625 -3.5761 0.6014 12 6 2.4083 -4.0809 -1.4507 13 6 1.6327 -5.4053 -1.6806 14 7 0.5247 -5.3270 -0.7164 15 6 -0.1558 -6.5765 -0.4040 16 6 -1.2949 -6.2781 0.5623 17 6 -0.7720 -5.5873 1.8212 18 6 0.0544 -4.3453 1.4531 19 6 1.1663 -4.7943 0.5150 20 1 1.7728 -5.5653 0.9902 21 1 -0.4850 0.8401 -0.0004 22 1 0.3556 -2.3880 -0.0016 23 1 3.4810 -4.2480 -1.5479 24 1 2.0781 -3.3206 -2.1585 25 1 1.2512 -5.4545 -2.7005 26 1 2.2683 -6.2645 -1.4659 27 1 -0.5512 -7.0200 -1.3178 28 1 0.5408 -7.2675 0.0709 29 1 -1.7862 -7.2100 0.8418 30 1 -2.0162 -5.6267 0.0687 31 1 -0.1457 -6.2833 2.3792 32 1 -1.6155 -5.2865 2.4427 33 1 0.4846 -3.9070 2.3537 34 1 -0.5793 -3.6133 0.9522 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250833942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:43 Heat of formation + Delta-G solvation = -6.934979 kcal Electronic energy + Delta-G solvation = -14645.301743 eV Core-core repulsion = 12383.999572 eV Total energy + Delta-G solvation = -2261.302170 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91198 -36.65670 -35.21243 -33.40219 -31.20148 -29.98464 -27.62509 -25.25461 -23.91638 -22.46991 -21.40460 -20.24328 -19.19575 -16.92671 -16.73755 -15.97804 -15.83430 -15.52549 -14.90462 -14.63807 -14.24336 -14.13668 -13.37267 -13.35100 -12.96602 -12.82074 -12.67841 -12.25221 -12.06125 -11.93666 -11.80859 -11.63594 -11.28344 -11.18569 -11.09366 -10.91138 -9.22606 -8.89334 -7.88887 -5.15635 1.47878 1.48623 1.58491 2.59067 3.12846 3.42776 3.72266 3.88872 4.01305 4.06713 4.21658 4.38379 4.39756 4.46193 4.49932 4.62691 4.70679 4.84482 4.88462 4.97015 5.05009 5.08782 5.17472 5.19105 5.29254 5.39898 5.50284 5.56947 5.60786 6.11486 6.33647 6.48009 7.39881 8.20155 8.44280 9.34988 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043454 B = 0.009142 C = 0.008163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.206262 B = 3061.977728 C = 3429.249017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.235 4.235 8 H 0.074 0.926 9 N -0.723 5.723 10 C 0.168 3.832 11 H 0.049 0.951 12 C -0.141 4.141 13 C 0.055 3.945 14 N -0.541 5.541 15 C 0.056 3.944 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.095 4.095 19 C 0.067 3.933 20 H 0.061 0.939 21 H 0.248 0.752 22 H 0.377 0.623 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -14.741 0.816 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.364 5.364 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.182 4.182 13 C -0.073 4.073 14 N -0.266 5.266 15 C -0.072 4.072 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.133 4.133 19 C -0.041 4.041 20 H 0.079 0.921 21 H 0.057 0.943 22 H 0.212 0.788 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.167 -14.338 0.606 14.399 hybrid contribution 0.541 0.808 0.118 0.979 sum 1.708 -13.531 0.725 13.657 Atomic orbital electron populations 1.69845 1.06569 1.25646 1.59994 1.25508 0.96311 1.00864 1.04322 0.85113 0.78243 0.80182 0.76483 1.19085 1.22370 1.22208 1.19686 0.91352 0.85416 1.40216 0.90845 1.42607 1.05652 1.00207 1.87943 1.21051 0.93508 0.85558 0.94078 0.93338 1.23274 0.99233 0.96634 0.99082 1.22728 0.91400 0.96471 0.96661 1.63792 1.27164 1.27434 1.08229 1.21829 0.96224 0.89757 0.99360 1.21363 0.97509 1.00966 0.95135 1.21576 0.99567 0.96173 0.97767 1.21244 0.96772 0.97689 0.97639 1.22594 0.94505 0.95936 0.91113 0.92116 0.94268 0.78842 0.91013 0.93534 0.90522 0.92795 0.90005 0.94193 0.89176 0.93039 0.91185 0.91600 0.92972 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.23 -13.32 9.97 84.03 0.84 -12.48 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -37.66 4.66 -318.91 -1.48 -39.15 16 10 C 0.17 6.92 3.60 45.85 0.16 7.08 16 11 H 0.05 1.99 8.12 -2.39 -0.02 1.98 16 12 C -0.14 -5.15 6.84 32.03 0.22 -4.94 16 13 C 0.06 1.66 6.71 87.02 0.58 2.24 16 14 N -0.54 -17.54 4.86 -866.32 -4.21 -21.75 16 15 C 0.06 1.41 5.78 86.31 0.50 1.91 16 16 C -0.11 -2.73 6.02 30.31 0.18 -2.55 16 17 C -0.11 -3.02 5.95 30.76 0.18 -2.84 16 18 C -0.10 -3.40 5.09 30.57 0.16 -3.25 16 19 C 0.07 2.32 2.40 44.48 0.11 2.43 16 20 H 0.06 1.86 7.98 -2.39 -0.02 1.84 16 21 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 22 H 0.38 21.40 5.91 -92.71 -0.55 20.85 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 1.99 7.97 -2.39 -0.02 1.97 16 25 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 0.90 7.99 -2.38 -0.02 0.88 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.95 6.48 -2.39 -0.02 1.93 16 Total: -1.00 -64.54 265.16 0.53 -64.01 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.51 Total: 24.81 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 3.40 Total: -16.53 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -5.41 Total: -121.56 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -64.54 0.53 -64.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250833942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.077 kcal (2) G-P(sol) polarization free energy of solvation -64.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds