Wall clock time and date at job start Mon Mar 30 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47181 * 239.99807 * 3 2 1 5 5 H 1.48496 * 109.47007 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47325 * 119.99823 * 3 2 1 7 7 C 1.38809 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00312 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00427 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.43401 * 327.54721 * 10 9 7 12 12 C 1.54988 * 110.60171 * 90.16810 * 10 9 7 13 13 C 1.55190 * 104.93021 * 121.22400 * 12 10 9 14 14 N 1.47536 * 103.99636 * 23.52191 * 13 12 10 15 15 C 1.45667 * 117.16062 * 198.33664 * 14 13 12 16 16 C 1.53542 * 107.78729 * 182.78110 * 15 14 13 17 17 C 1.52818 * 110.75143 * 302.60550 * 16 15 14 18 18 C 1.53660 * 110.57446 * 53.76079 * 17 16 15 19 19 C 1.48724 * 103.48180 * 318.71117 * 14 13 12 20 20 H 1.09004 * 110.33284 * 284.91217 * 19 14 13 21 21 H 0.96997 * 119.99679 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99222 * 0.02562 * 9 7 2 23 23 H 1.08998 * 110.34857 * 240.09066 * 12 10 9 24 24 H 1.09007 * 110.34678 * 2.25941 * 12 10 9 25 25 H 1.09010 * 110.60947 * 142.50762 * 13 12 10 26 26 H 1.09004 * 110.61277 * 265.48402 * 13 12 10 27 27 H 1.09004 * 109.79148 * 302.36288 * 15 14 13 28 28 H 1.09008 * 109.79290 * 63.14491 * 15 14 13 29 29 H 1.09003 * 109.17725 * 182.29095 * 16 15 14 30 30 H 1.08996 * 109.23326 * 62.95438 * 16 15 14 31 31 H 1.09002 * 109.25197 * 293.48914 * 17 16 15 32 32 H 1.09004 * 109.25019 * 174.03010 * 17 16 15 33 33 H 1.09004 * 109.83624 * 63.40798 * 18 17 16 34 34 H 1.09000 * 109.84464 * 184.30852 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9949 -3.5554 -0.5476 12 6 2.3272 -4.1312 1.4513 13 6 1.6505 -5.5244 1.5483 14 7 1.5922 -5.9909 0.1498 15 6 0.6594 -7.0678 -0.1536 16 6 0.8245 -7.4273 -1.6371 17 6 0.5858 -6.2035 -2.5207 18 6 1.4814 -5.0356 -2.0790 19 6 1.1997 -4.7718 -0.6062 20 1 0.1413 -4.5578 -0.4568 21 1 -0.4849 0.8400 -0.0004 22 1 0.3556 -2.3880 -0.0002 23 1 3.3991 -4.2171 1.6294 24 1 1.8792 -3.4400 2.1653 25 1 2.2506 -6.2009 2.1571 26 1 0.6426 -5.4342 1.9532 27 1 0.8852 -7.9368 0.4645 28 1 -0.3616 -6.7359 0.0355 29 1 0.1069 -8.2048 -1.8992 30 1 1.8346 -7.8004 -1.8059 31 1 -0.4594 -5.9036 -2.4445 32 1 0.8120 -6.4582 -3.5561 33 1 2.5298 -5.3022 -2.2131 34 1 1.2477 -4.1475 -2.6661 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250833944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:46 Heat of formation + Delta-G solvation = 8.093551 kcal Electronic energy + Delta-G solvation = -14459.902757 eV Core-core repulsion = 12199.252273 eV Total energy + Delta-G solvation = -2260.650484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49584 -35.21216 -33.54430 -31.72428 -29.74715 -28.59934 -25.97814 -23.27212 -22.67363 -21.22152 -19.62913 -19.50786 -17.06303 -15.60106 -14.92559 -14.67343 -14.34247 -14.02840 -13.40634 -13.05264 -12.95990 -12.67334 -12.20873 -11.82290 -11.44192 -10.99940 -10.91285 -10.77509 -10.64067 -10.52218 -10.29113 -10.12720 -9.96981 -9.73591 -9.60730 -8.85870 -8.04532 -6.93578 -5.74994 -3.03729 3.45593 3.49899 3.50893 4.28368 4.63488 4.97533 5.04549 5.11789 5.46063 5.47558 5.52331 5.67753 5.68773 5.77100 5.82407 5.86667 5.97364 6.06206 6.15109 6.16304 6.28270 6.37682 6.48694 6.51988 6.56870 6.73735 6.84511 7.03178 7.36791 7.59132 7.73746 8.43990 9.54432 10.12545 10.46945 11.47674 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048477 B = 0.008087 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.452772 B = 3461.486734 C = 3741.641158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.060 0.940 12 C -0.145 4.145 13 C 0.047 3.953 14 N -0.529 5.529 15 C 0.057 3.943 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.101 4.101 19 C 0.060 3.940 20 H 0.049 0.951 21 H 0.255 0.745 22 H 0.382 0.618 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 -13.176 -1.396 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.078 0.922 12 C -0.187 4.187 13 C -0.081 4.081 14 N -0.254 5.254 15 C -0.072 4.072 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.139 4.139 19 C -0.049 4.049 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.216 0.784 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.191 -13.252 -1.541 13.520 hybrid contribution -0.750 1.127 0.388 1.408 sum 1.441 -12.125 -1.153 12.265 Atomic orbital electron populations 1.69655 1.05121 1.25734 1.57781 1.24740 0.95499 0.97673 1.03056 0.86268 0.78510 0.83558 0.77862 1.21262 1.21747 1.21282 1.19221 0.91024 0.84047 1.42595 0.91139 1.42459 1.05618 0.99717 1.88222 1.20703 0.94494 0.85170 0.92351 0.92187 1.23393 0.99646 0.94282 1.01346 1.22860 0.98878 0.97079 0.89300 1.63805 1.48091 1.06326 1.07212 1.21954 0.93874 0.94805 0.96572 1.21543 1.01828 0.97461 0.94082 1.21602 0.99893 0.95568 0.98729 1.21437 0.99866 0.97581 0.94976 1.22678 0.98339 0.90075 0.93801 0.93333 0.93502 0.78374 0.92383 0.90752 0.91322 0.94935 0.91397 0.95276 0.92294 0.91476 0.92608 0.92281 0.91346 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.26 5.10 -52.28 -0.27 -18.52 16 10 C 0.18 3.83 3.35 -66.75 -0.22 3.60 16 11 H 0.06 1.29 7.94 -51.93 -0.41 0.88 16 12 C -0.15 -2.73 6.85 -24.52 -0.17 -2.90 16 13 C 0.05 0.76 6.75 -2.32 -0.02 0.74 16 14 N -0.53 -8.52 4.85 -224.17 -1.09 -9.60 16 15 C 0.06 0.78 5.91 -4.21 -0.02 0.75 16 16 C -0.11 -1.37 6.05 -26.54 -0.16 -1.53 16 17 C -0.12 -1.61 5.95 -26.48 -0.16 -1.77 16 18 C -0.10 -1.63 5.64 -26.77 -0.15 -1.78 16 19 C 0.06 1.08 2.16 -66.96 -0.14 0.93 16 20 H 0.05 0.96 7.62 -51.93 -0.40 0.56 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.38 10.35 7.60 -40.82 -0.31 10.04 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.53 7.97 -51.92 -0.41 1.12 16 25 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 26 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.41 7.98 -51.92 -0.41 0.00 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -29.24 268.67 -8.62 -37.85 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.72 Total: 5.58 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.29 Total: -9.22 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.63 Total: -55.73 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.24 -8.62 -37.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250833944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.947 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds