Wall clock time and date at job start Mon Mar 30 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47181 * 239.99807 * 3 2 1 5 5 H 1.48496 * 109.47007 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47325 * 119.99823 * 3 2 1 7 7 C 1.38809 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00312 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00427 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.43401 * 327.54721 * 10 9 7 12 12 C 1.54988 * 110.60171 * 90.16810 * 10 9 7 13 13 C 1.55190 * 104.93021 * 121.22400 * 12 10 9 14 14 N 1.47536 * 103.99636 * 23.52191 * 13 12 10 15 15 C 1.45667 * 117.16062 * 198.33664 * 14 13 12 16 16 C 1.53542 * 107.78729 * 182.78110 * 15 14 13 17 17 C 1.52818 * 110.75143 * 302.60550 * 16 15 14 18 18 C 1.53660 * 110.57446 * 53.76079 * 17 16 15 19 19 C 1.48724 * 103.48180 * 318.71117 * 14 13 12 20 20 H 1.09004 * 110.33284 * 284.91217 * 19 14 13 21 21 H 0.96997 * 119.99679 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99222 * 0.02562 * 9 7 2 23 23 H 1.08998 * 110.34857 * 240.09066 * 12 10 9 24 24 H 1.09007 * 110.34678 * 2.25941 * 12 10 9 25 25 H 1.09010 * 110.60947 * 142.50762 * 13 12 10 26 26 H 1.09004 * 110.61277 * 265.48402 * 13 12 10 27 27 H 1.09004 * 109.79148 * 302.36288 * 15 14 13 28 28 H 1.09008 * 109.79290 * 63.14491 * 15 14 13 29 29 H 1.09003 * 109.17725 * 182.29095 * 16 15 14 30 30 H 1.08996 * 109.23326 * 62.95438 * 16 15 14 31 31 H 1.09002 * 109.25197 * 293.48914 * 17 16 15 32 32 H 1.09004 * 109.25019 * 174.03010 * 17 16 15 33 33 H 1.09004 * 109.83624 * 63.40798 * 18 17 16 34 34 H 1.09000 * 109.84464 * 184.30852 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9949 -3.5554 -0.5476 12 6 2.3272 -4.1312 1.4513 13 6 1.6505 -5.5244 1.5483 14 7 1.5922 -5.9909 0.1498 15 6 0.6594 -7.0678 -0.1536 16 6 0.8245 -7.4273 -1.6371 17 6 0.5858 -6.2035 -2.5207 18 6 1.4814 -5.0356 -2.0790 19 6 1.1997 -4.7718 -0.6062 20 1 0.1413 -4.5578 -0.4568 21 1 -0.4849 0.8400 -0.0004 22 1 0.3556 -2.3880 -0.0002 23 1 3.3991 -4.2171 1.6294 24 1 1.8792 -3.4400 2.1653 25 1 2.2506 -6.2009 2.1571 26 1 0.6426 -5.4342 1.9532 27 1 0.8852 -7.9368 0.4645 28 1 -0.3616 -6.7359 0.0355 29 1 0.1069 -8.2048 -1.8992 30 1 1.8346 -7.8004 -1.8059 31 1 -0.4594 -5.9036 -2.4445 32 1 0.8120 -6.4582 -3.5561 33 1 2.5298 -5.3022 -2.2131 34 1 1.2477 -4.1475 -2.6661 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250833944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:46 Heat of formation + Delta-G solvation = -11.309213 kcal Electronic energy + Delta-G solvation = -14460.744124 eV Core-core repulsion = 12199.252273 eV Total energy + Delta-G solvation = -2261.491851 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85910 -36.79107 -35.15388 -33.41774 -31.42683 -29.97128 -27.60085 -25.20785 -23.92392 -22.51528 -21.21628 -20.80096 -19.11550 -17.14167 -16.45672 -16.05953 -15.95332 -15.47029 -14.92488 -14.59672 -14.30828 -14.24117 -13.51264 -13.32344 -13.03126 -12.88096 -12.59717 -12.25680 -12.16911 -12.11944 -11.83032 -11.61801 -11.46998 -11.26738 -11.12890 -10.88101 -9.35779 -9.01684 -7.94745 -5.23849 1.47015 1.50168 1.56202 2.55121 3.02327 3.37586 3.69099 3.83795 3.98356 4.04448 4.21514 4.30432 4.36410 4.41859 4.44605 4.59626 4.72191 4.73619 4.85420 4.99221 5.04513 5.07258 5.15422 5.20276 5.26523 5.32085 5.46161 5.50258 5.51725 5.94644 6.28046 6.34631 7.32372 8.07256 8.31297 9.28663 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048477 B = 0.008087 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.452772 B = 3461.486734 C = 3741.641158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.731 5.731 10 C 0.174 3.826 11 H 0.052 0.948 12 C -0.141 4.141 13 C 0.053 3.947 14 N -0.525 5.525 15 C 0.051 3.949 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.099 4.099 19 C 0.067 3.933 20 H 0.027 0.973 21 H 0.251 0.749 22 H 0.370 0.630 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.028 0.972 27 H 0.091 0.909 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -14.876 -1.545 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.093 0.907 9 N -0.370 5.370 10 C 0.065 3.935 11 H 0.070 0.930 12 C -0.182 4.182 13 C -0.075 4.075 14 N -0.251 5.251 15 C -0.077 4.077 16 C -0.144 4.144 17 C -0.155 4.155 18 C -0.137 4.137 19 C -0.042 4.042 20 H 0.045 0.955 21 H 0.059 0.941 22 H 0.202 0.798 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.040 0.960 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.187 -14.999 -1.687 15.427 hybrid contribution -1.022 1.584 0.443 1.936 sum 2.165 -13.415 -1.245 13.646 Atomic orbital electron populations 1.69819 1.06652 1.26095 1.59620 1.25560 0.96362 1.01073 1.03758 0.85210 0.77191 0.79142 0.78219 1.20348 1.22184 1.20392 1.19595 0.91422 0.85140 1.41043 0.90662 1.42596 1.05124 1.00838 1.88458 1.20919 0.94197 0.84439 0.93945 0.93031 1.23226 1.00550 0.95484 0.98903 1.22835 0.98811 0.95904 0.89915 1.63857 1.48836 1.05737 1.06630 1.22141 0.92912 0.94434 0.98188 1.21539 1.03032 0.97286 0.92512 1.21591 0.98722 0.94936 1.00223 1.21410 1.00816 0.98149 0.93353 1.22483 0.96300 0.90163 0.95295 0.95541 0.94055 0.79837 0.91126 0.93149 0.88511 0.95369 0.89086 0.95956 0.89622 0.90859 0.93224 0.90288 0.90933 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.24 -13.60 9.96 84.03 0.84 -12.77 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -38.11 5.10 -319.33 -1.63 -39.74 16 10 C 0.17 7.33 3.35 45.76 0.15 7.48 16 11 H 0.05 2.23 7.94 -2.39 -0.02 2.21 16 12 C -0.14 -5.22 6.85 32.03 0.22 -5.00 16 13 C 0.05 1.63 6.75 86.93 0.59 2.21 16 14 N -0.53 -15.88 4.85 -863.14 -4.19 -20.06 16 15 C 0.05 1.26 5.91 86.72 0.51 1.77 16 16 C -0.11 -2.24 6.05 30.72 0.19 -2.06 16 17 C -0.12 -2.90 5.95 30.76 0.18 -2.72 16 18 C -0.10 -3.15 5.64 30.57 0.17 -2.98 16 19 C 0.07 2.40 2.16 44.40 0.10 2.49 16 20 H 0.03 1.07 7.62 -2.39 -0.02 1.05 16 21 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 22 H 0.37 20.85 7.60 -92.70 -0.70 20.15 16 23 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 24 H 0.05 2.10 7.97 -2.38 -0.02 2.08 16 25 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.03 0.89 8.13 -2.38 -0.02 0.87 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.02 0.59 7.98 -2.38 -0.02 0.57 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.92 268.67 0.26 -62.66 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.35 Total: 23.98 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 3.41 Total: -15.50 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -5.53 Total: -119.85 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -62.92 0.26 -62.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250833944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.350 kcal (2) G-P(sol) polarization free energy of solvation -62.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds