Wall clock time and date at job start Mon Mar 30 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00138 * 2 1 4 4 N 1.46900 * 109.47371 * 124.99691 * 3 2 1 5 5 C 1.46963 * 110.99608 * 46.19932 * 4 3 2 6 6 C 1.53053 * 109.36224 * 183.18585 * 5 4 3 7 7 H 1.09003 * 109.50261 * 61.58067 * 6 5 4 8 8 C 1.53004 * 109.49021 * 181.62980 * 6 5 4 9 9 N 1.46956 * 109.36712 * 301.60353 * 6 5 4 10 10 C 1.46959 * 110.88043 * 59.31933 * 9 6 5 11 11 C 1.46956 * 111.00354 * 169.99826 * 4 3 2 12 12 H 1.08997 * 109.48658 * 296.78215 * 11 4 3 13 13 C 1.50697 * 109.48392 * 56.82318 * 11 4 3 14 14 H 1.08001 * 120.00693 * 0.02562 * 13 11 4 15 15 C 1.37877 * 119.99712 * 180.02562 * 13 11 4 16 16 N 1.31511 * 120.00342 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99888 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47411 * 59.99977 * 17 15 13 19 19 H 1.48507 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47219 * 299.99796 * 17 15 13 21 21 H 1.08001 * 120.00370 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.00409 * 179.97438 * 1 2 3 23 23 H 1.08005 * 119.99880 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.46824 * 4.99490 * 3 2 1 25 25 H 1.08995 * 109.47063 * 244.99834 * 3 2 1 26 26 H 1.09000 * 109.49332 * 303.15252 * 5 4 3 27 27 H 1.08997 * 109.48746 * 63.22950 * 5 4 3 28 28 H 1.08994 * 109.46804 * 179.89189 * 8 6 5 29 29 H 1.08992 * 109.46914 * 299.89670 * 8 6 5 30 30 H 1.08998 * 109.46529 * 59.89408 * 8 6 5 31 31 H 1.00894 * 110.99955 * 295.45123 * 9 6 5 32 32 H 1.09001 * 109.48442 * 180.71134 * 10 9 6 33 33 H 1.09002 * 109.50679 * 60.65829 * 10 9 6 34 34 H 0.96998 * 120.00273 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 3.7427 0.0699 1.2326 6 6 4.6428 0.1075 2.4699 7 1 4.0281 0.2101 3.3642 8 6 5.4515 -1.1887 2.5525 9 7 5.5594 1.2519 2.3711 10 6 4.8129 2.5140 2.2730 11 6 3.9129 2.4764 1.0357 12 1 4.5278 2.3735 0.1417 13 6 3.1163 3.7529 0.9539 14 1 2.0370 3.7183 0.9737 15 6 3.7653 4.9653 0.8537 16 7 5.0795 5.0076 0.8290 17 14 2.7779 6.5478 0.7530 18 1 1.9419 6.6881 1.9722 19 1 3.7045 7.7039 0.6518 20 1 1.9023 6.5095 -0.4458 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5401 -0.9353 -0.0004 23 1 1.8499 -0.9354 0.0004 24 1 1.3585 2.1316 0.0895 25 1 2.6212 1.4025 -0.9313 26 1 3.0425 -0.7612 1.3175 27 1 4.3558 -0.0602 0.3409 28 1 6.0938 -1.1607 3.4326 29 1 4.7714 -2.0372 2.6258 30 1 6.0655 -1.2914 1.6577 31 1 6.1904 1.1435 1.5913 32 1 5.5132 3.3450 2.1882 33 1 4.1999 2.6445 3.1648 34 1 5.5361 5.8605 0.7589 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251654426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:44 Heat of formation + Delta-G solvation = 27.416528 kcal Electronic energy + Delta-G solvation = -14565.677245 eV Core-core repulsion = 12305.864668 eV Total energy + Delta-G solvation = -2259.812577 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.63687 -35.01598 -33.47385 -31.77155 -30.69347 -27.25166 -26.00218 -24.07235 -22.72578 -20.75088 -19.55483 -18.89919 -16.48630 -15.30895 -14.95913 -14.56779 -14.26549 -13.93247 -13.44931 -13.07711 -12.68990 -12.47768 -12.16860 -11.70587 -11.41498 -10.96377 -10.82437 -10.75933 -10.66659 -10.49399 -10.24024 -10.04783 -9.74277 -9.28511 -9.06361 -8.52020 -7.47714 -7.14666 -6.08022 -4.11300 2.62897 3.29615 3.34304 3.37151 4.36792 4.90361 5.10759 5.25988 5.30313 5.51847 5.59165 5.77738 5.85755 5.97464 6.07974 6.15188 6.23877 6.25466 6.46640 6.50713 6.64417 6.80462 6.93765 6.97715 7.19303 7.23215 7.60002 7.74691 7.90771 8.09389 8.13839 8.37534 8.54931 8.94086 9.53187 10.99302 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.012258 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.762479 B = 2283.720153 C = 3251.185177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C 0.091 3.909 4 N -0.528 5.528 5 C 0.021 3.979 6 C 0.085 3.915 7 H 0.079 0.921 8 C -0.141 4.141 9 N -0.692 5.692 10 C 0.067 3.933 11 C 0.186 3.814 12 H -0.003 1.003 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.278 1.278 21 H 0.096 0.904 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.326 0.674 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -8.796 -0.136 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.161 4.161 3 C -0.036 4.036 4 N -0.252 5.252 5 C -0.109 4.109 6 C -0.026 4.026 7 H 0.097 0.903 8 C -0.199 4.199 9 N -0.320 5.320 10 C -0.062 4.062 11 C 0.079 3.921 12 H 0.014 0.986 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.204 1.204 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.504 -8.527 0.987 8.942 hybrid contribution -0.398 0.700 -1.826 1.996 sum -2.902 -7.827 -0.839 8.390 Atomic orbital electron populations 1.23705 0.95882 1.01245 1.02923 1.23186 0.96119 0.98791 0.98028 1.21113 0.95701 0.94336 0.92478 1.62364 1.19472 1.02416 1.40980 1.22882 0.96417 0.94107 0.97507 1.21566 0.92761 0.90936 0.97376 0.90252 1.21776 0.99845 0.96521 1.01747 1.61037 1.19867 1.03030 1.48115 1.22302 0.96633 0.89870 0.97427 1.19954 0.90380 0.87657 0.94156 0.98571 1.21032 0.93267 0.89934 1.50272 0.91936 1.24941 0.94980 0.99157 0.94995 1.69838 1.06967 1.25999 1.50394 0.86546 0.79728 0.82423 0.78649 1.20115 1.21275 1.20387 0.88597 0.89192 0.88078 0.89807 0.94976 0.91669 0.96510 0.92112 0.92876 0.93321 0.85766 0.87476 0.92643 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 14.32 29.02 0.42 -2.49 16 2 C -0.14 -2.34 8.57 -36.02 -0.31 -2.65 16 3 C 0.09 1.83 5.15 -4.98 -0.03 1.81 16 4 N -0.53 -11.53 4.66 -229.32 -1.07 -12.60 16 5 C 0.02 0.39 4.36 -3.76 -0.02 0.38 16 6 C 0.08 1.52 3.20 -67.65 -0.22 1.31 16 7 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 8 C -0.14 -2.00 9.45 37.16 0.35 -1.64 16 9 N -0.69 -14.16 6.56 -106.58 -0.70 -14.86 16 10 C 0.07 1.61 5.76 -3.77 -0.02 1.59 16 11 C 0.19 4.66 1.90 -68.81 -0.13 4.53 16 12 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 13 C -0.51 -13.71 8.02 -34.44 -0.28 -13.99 16 14 H 0.06 1.70 6.50 -52.49 -0.34 1.36 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -24.94 11.35 55.43 0.63 -24.31 16 17 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H 0.10 1.39 7.84 -52.49 -0.41 0.98 16 22 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 23 H 0.10 1.53 6.53 -52.48 -0.34 1.18 16 24 H 0.08 1.79 6.33 -51.93 -0.33 1.46 16 25 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.07 1.10 5.96 -51.93 -0.31 0.79 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.33 6.53 8.79 -39.30 -0.35 6.18 16 32 H 0.11 2.85 6.13 -51.93 -0.32 2.53 16 33 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 269.00 15.07 4.05 4.05 Total: -1.00 -27.38 269.00 -7.76 -35.15 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.33 Total: 6.03 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.32 Total: -9.59 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -1.14 Total: -51.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.38 -7.76 -35.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251654426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.563 kcal (2) G-P(sol) polarization free energy of solvation -27.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds