Wall clock time and date at job start Mon Mar 30 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00138 * 2 1 4 4 N 1.46900 * 109.47371 * 124.99691 * 3 2 1 5 5 C 1.46963 * 110.99608 * 46.19932 * 4 3 2 6 6 C 1.53053 * 109.36224 * 183.18585 * 5 4 3 7 7 H 1.09003 * 109.50261 * 61.58067 * 6 5 4 8 8 C 1.53004 * 109.49021 * 181.62980 * 6 5 4 9 9 N 1.46956 * 109.36712 * 301.60353 * 6 5 4 10 10 C 1.46959 * 110.88043 * 59.31933 * 9 6 5 11 11 C 1.46956 * 111.00354 * 169.99826 * 4 3 2 12 12 H 1.08997 * 109.48658 * 296.78215 * 11 4 3 13 13 C 1.50697 * 109.48392 * 56.82318 * 11 4 3 14 14 H 1.08001 * 120.00693 * 0.02562 * 13 11 4 15 15 C 1.37877 * 119.99712 * 180.02562 * 13 11 4 16 16 N 1.31511 * 120.00342 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99888 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47411 * 59.99977 * 17 15 13 19 19 H 1.48507 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47219 * 299.99796 * 17 15 13 21 21 H 1.08001 * 120.00370 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.00409 * 179.97438 * 1 2 3 23 23 H 1.08005 * 119.99880 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.46824 * 4.99490 * 3 2 1 25 25 H 1.08995 * 109.47063 * 244.99834 * 3 2 1 26 26 H 1.09000 * 109.49332 * 303.15252 * 5 4 3 27 27 H 1.08997 * 109.48746 * 63.22950 * 5 4 3 28 28 H 1.08994 * 109.46804 * 179.89189 * 8 6 5 29 29 H 1.08992 * 109.46914 * 299.89670 * 8 6 5 30 30 H 1.08998 * 109.46529 * 59.89408 * 8 6 5 31 31 H 1.00894 * 110.99955 * 295.45123 * 9 6 5 32 32 H 1.09001 * 109.48442 * 180.71134 * 10 9 6 33 33 H 1.09002 * 109.50679 * 60.65829 * 10 9 6 34 34 H 0.96998 * 120.00273 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 3.7427 0.0699 1.2326 6 6 4.6428 0.1075 2.4699 7 1 4.0281 0.2101 3.3642 8 6 5.4515 -1.1887 2.5525 9 7 5.5594 1.2519 2.3711 10 6 4.8129 2.5140 2.2730 11 6 3.9129 2.4764 1.0357 12 1 4.5278 2.3735 0.1417 13 6 3.1163 3.7529 0.9539 14 1 2.0370 3.7183 0.9737 15 6 3.7653 4.9653 0.8537 16 7 5.0795 5.0076 0.8290 17 14 2.7779 6.5478 0.7530 18 1 1.9419 6.6881 1.9722 19 1 3.7045 7.7039 0.6518 20 1 1.9023 6.5095 -0.4458 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5401 -0.9353 -0.0004 23 1 1.8499 -0.9354 0.0004 24 1 1.3585 2.1316 0.0895 25 1 2.6212 1.4025 -0.9313 26 1 3.0425 -0.7612 1.3175 27 1 4.3558 -0.0602 0.3409 28 1 6.0938 -1.1607 3.4326 29 1 4.7714 -2.0372 2.6258 30 1 6.0655 -1.2914 1.6577 31 1 6.1904 1.1435 1.5913 32 1 5.5132 3.3450 2.1882 33 1 4.1999 2.6445 3.1648 34 1 5.5361 5.8605 0.7589 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251654426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:44 Heat of formation + Delta-G solvation = 7.687010 kcal Electronic energy + Delta-G solvation = -14566.532781 eV Core-core repulsion = 12305.864668 eV Total energy + Delta-G solvation = -2260.668113 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.32357 -36.51376 -35.36945 -33.35902 -32.38149 -28.99332 -27.52268 -25.92996 -24.38119 -22.36096 -21.29236 -20.28938 -18.52554 -17.06001 -16.53177 -16.21816 -15.87595 -15.64606 -15.13696 -14.66375 -14.27415 -14.08486 -13.76001 -13.07911 -12.95366 -12.81075 -12.63410 -12.37160 -12.14078 -12.05826 -12.02514 -11.80426 -11.60374 -11.09399 -10.63010 -10.36758 -9.22583 -8.90913 -8.16694 -6.27381 1.38728 1.40434 1.41963 1.49711 2.39021 3.10823 3.29249 3.56773 3.97693 4.11370 4.27979 4.32064 4.43020 4.57413 4.64429 4.73068 4.80715 4.85028 4.95595 4.98873 5.12367 5.24031 5.29224 5.32906 5.62894 5.65891 5.69130 5.92613 6.03293 6.24821 6.35794 6.59868 6.67895 6.86093 7.40697 8.89341 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.012258 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.762479 B = 2283.720153 C = 3251.185177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.163 4.163 3 C 0.094 3.906 4 N -0.538 5.538 5 C 0.023 3.977 6 C 0.082 3.918 7 H 0.070 0.930 8 C -0.130 4.130 9 N -0.689 5.689 10 C 0.082 3.918 11 C 0.194 3.806 12 H -0.042 1.042 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.961 3.039 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.273 1.273 21 H 0.092 0.908 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.063 0.937 25 H 0.011 0.989 26 H 0.094 0.906 27 H 0.012 0.988 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.329 0.671 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -10.391 0.095 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C -0.033 4.033 4 N -0.262 5.262 5 C -0.106 4.106 6 C -0.029 4.029 7 H 0.088 0.912 8 C -0.188 4.188 9 N -0.317 5.317 10 C -0.048 4.048 11 C 0.086 3.914 12 H -0.025 1.025 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.786 3.214 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.199 1.199 21 H 0.110 0.890 22 H 0.142 0.858 23 H 0.138 0.862 24 H 0.081 0.919 25 H 0.029 0.971 26 H 0.112 0.888 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.618 -10.149 1.219 10.843 hybrid contribution -0.106 1.154 -1.908 2.232 sum -3.724 -8.994 -0.689 9.759 Atomic orbital electron populations 1.23977 0.95217 1.02702 0.99258 1.22996 0.96660 0.97237 1.01258 1.21027 0.95057 0.96269 0.90950 1.62308 1.19275 1.02839 1.41792 1.22973 0.96846 0.93286 0.97501 1.21721 0.92786 0.91766 0.96592 0.91186 1.21696 0.99939 0.94777 1.02347 1.60984 1.20022 1.02573 1.48101 1.21885 0.95737 0.91027 0.96101 1.19712 0.90377 0.88629 0.92701 1.02469 1.21291 0.93154 0.91308 1.50605 0.92640 1.25705 0.95943 1.02172 0.94573 1.69967 1.08218 1.26656 1.50739 0.85570 0.78426 0.78655 0.78749 1.19640 1.20692 1.19852 0.89013 0.85755 0.86186 0.91904 0.97069 0.88820 0.96954 0.91523 0.90199 0.92719 0.85448 0.90308 0.94300 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 14.32 67.79 0.97 -3.55 16 2 C -0.16 -5.02 8.57 25.65 0.22 -4.80 16 3 C 0.09 3.84 5.15 85.56 0.44 4.28 16 4 N -0.54 -23.72 4.66 -879.43 -4.10 -27.82 16 5 C 0.02 0.85 4.36 86.31 0.38 1.22 16 6 C 0.08 2.84 3.20 44.92 0.14 2.98 16 7 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 8 C -0.13 -3.28 9.45 71.98 0.68 -2.60 16 9 N -0.69 -28.27 6.56 -491.12 -3.22 -31.50 16 10 C 0.08 4.12 5.76 86.31 0.50 4.62 16 11 C 0.19 10.10 1.90 44.17 0.08 10.19 16 12 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 13 C -0.52 -29.36 8.02 25.60 0.21 -29.15 16 14 H 0.06 3.11 6.50 -2.91 -0.02 3.09 16 15 C 0.02 0.86 5.30 84.66 0.45 1.31 16 16 N -0.92 -52.66 11.35 21.45 0.24 -52.42 16 17 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H 0.09 2.47 7.84 -2.91 -0.02 2.45 16 22 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 23 H 0.12 3.24 6.53 -2.91 -0.02 3.22 16 24 H 0.06 2.75 6.33 -2.39 -0.02 2.74 16 25 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 26 H 0.09 2.87 5.96 -2.39 -0.01 2.85 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.33 13.27 8.79 -89.70 -0.79 12.48 16 32 H 0.08 4.38 6.13 -2.39 -0.01 4.36 16 33 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -60.51 269.00 -0.71 -61.22 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.28 Total: 20.05 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.07 Total: -15.51 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -7.08 Total: -111.73 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -60.51 -0.71 -61.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251654426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.908 kcal (2) G-P(sol) polarization free energy of solvation -60.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds