Wall clock time and date at job start Mon Mar 30 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.48517 * 2 1 4 4 C 1.53046 * 109.48774 * 120.06501 * 2 1 3 5 5 N 1.46953 * 109.36554 * 61.56846 * 4 2 1 6 6 C 1.46897 * 111.00149 * 183.18560 * 5 4 2 7 7 C 1.53005 * 117.49840 * 119.82578 * 6 5 4 8 8 C 1.52999 * 117.49818 * 51.20036 * 6 5 4 9 9 C 1.46963 * 110.88176 * 59.31731 * 5 4 2 10 10 H 1.08998 * 109.48714 * 60.64486 * 9 5 4 11 11 C 1.50692 * 109.49333 * 180.71445 * 9 5 4 12 12 H 1.08008 * 119.99875 * 359.88816 * 11 9 5 13 13 C 1.37872 * 120.00585 * 179.89276 * 11 9 5 14 14 N 1.31518 * 119.99749 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00435 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47315 * 89.99718 * 15 13 11 17 17 H 1.48500 * 109.47057 * 210.00051 * 15 13 11 18 18 H 1.48504 * 109.47053 * 329.99450 * 15 13 11 19 19 C 1.53056 * 109.36215 * 300.68256 * 9 5 4 20 20 N 1.46954 * 109.49101 * 239.95979 * 2 1 3 21 21 H 1.08993 * 109.46951 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46977 * 300.04431 * 1 2 3 23 23 H 1.09000 * 109.46839 * 60.04138 * 1 2 3 24 24 H 1.09002 * 109.48705 * 181.53519 * 4 2 1 25 25 H 1.09000 * 109.48811 * 301.60109 * 4 2 1 26 26 H 1.08999 * 115.55302 * 265.52734 * 6 5 4 27 27 H 1.08995 * 117.49788 * 359.97438 * 7 6 5 28 28 H 1.08997 * 117.49767 * 145.02196 * 7 6 5 29 29 H 1.09000 * 117.49617 * 214.97724 * 8 6 5 30 30 H 1.08998 * 117.50134 * 359.97438 * 8 6 5 31 31 H 0.97003 * 120.00189 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.48442 * 178.36542 * 19 9 5 33 33 H 1.09002 * 109.48876 * 298.43011 * 19 9 5 34 34 H 1.00893 * 111.00222 * 175.48157 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0277 0.0000 4 6 2.0406 -0.7228 1.2487 5 7 1.5809 -2.1184 1.2260 6 6 1.9878 -2.8266 2.4470 7 6 0.8806 -3.4064 3.3296 8 6 1.6561 -2.1697 3.7884 9 6 2.0712 -2.8120 0.0267 10 1 3.1612 -2.8120 0.0267 11 6 1.5681 -4.2325 0.0264 12 1 0.9477 -4.5858 0.8368 13 6 1.8997 -5.0811 -1.0084 14 7 2.6548 -4.6508 -1.9955 15 14 1.2754 -6.8417 -1.0092 16 1 -0.0333 -6.9026 -1.7084 17 1 2.2523 -7.7130 -1.7103 18 1 1.1109 -7.3092 0.3908 19 6 1.5606 -2.0891 -1.2220 20 7 2.0204 -0.6935 -1.1992 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5145 0.8896 23 1 -0.3633 0.5132 -0.8904 24 1 3.1303 -0.6990 1.2626 25 1 1.6543 -0.2271 2.1393 26 1 2.9209 -3.3856 2.3775 27 1 -0.1496 -3.2619 3.0045 28 1 1.0852 -4.3470 3.8408 29 1 2.3709 -2.2970 4.6015 30 1 1.1364 -1.2119 3.7650 31 1 2.8878 -5.2477 -2.7237 32 1 1.9469 -2.5848 -2.1126 33 1 0.4709 -2.1129 -1.2358 34 1 3.0262 -0.6431 -1.2603 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251663950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:29 Heat of formation + Delta-G solvation = 17.116036 kcal Electronic energy + Delta-G solvation = -14884.654189 eV Core-core repulsion = 12624.394949 eV Total energy + Delta-G solvation = -2260.259240 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49270 -37.56753 -35.25770 -33.19347 -32.06435 -28.97233 -26.59690 -25.59324 -23.42296 -22.69470 -21.51619 -19.96991 -18.52652 -17.60198 -16.58310 -16.08805 -16.00807 -15.33185 -15.29572 -14.74887 -14.17990 -13.82396 -13.25620 -13.08838 -12.83874 -12.69716 -12.59847 -12.25943 -12.12084 -12.04985 -11.88867 -11.57065 -11.25799 -11.15941 -10.83906 -10.54820 -9.18381 -8.85163 -8.13004 -6.21850 1.40569 1.41808 1.51460 2.41125 3.01976 3.10078 3.18540 3.59021 4.11714 4.15706 4.21540 4.25683 4.42734 4.52350 4.64507 4.73153 4.82363 4.88998 4.94383 5.03033 5.05395 5.11921 5.24692 5.34160 5.37648 5.52966 5.70834 5.73810 6.07756 6.31881 6.44631 6.62661 6.71421 6.93102 7.45874 8.93154 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.013617 C = 0.010072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.781495 B = 2055.817343 C = 2779.186401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.082 3.918 3 H 0.099 0.901 4 C 0.025 3.975 5 N -0.503 5.503 6 C 0.007 3.993 7 C -0.162 4.162 8 C -0.158 4.158 9 C 0.200 3.800 10 H -0.047 1.047 11 C -0.512 4.512 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.958 3.042 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.081 3.919 20 N -0.691 5.691 21 H 0.042 0.958 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.009 0.991 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.262 0.738 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 6.735 7.555 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.028 4.028 3 H 0.117 0.883 4 C -0.104 4.104 5 N -0.227 5.227 6 C -0.102 4.102 7 C -0.200 4.200 8 C -0.196 4.196 9 C 0.091 3.909 10 H -0.029 1.029 11 C -0.551 4.551 12 H 0.077 0.923 13 C -0.186 4.186 14 N -0.560 5.560 15 Si 0.784 3.216 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.049 4.049 20 N -0.319 5.319 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.027 0.973 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.104 6.926 6.941 10.286 hybrid contribution 1.506 -1.695 0.317 2.289 sum -1.598 5.232 7.258 9.089 Atomic orbital electron populations 1.21619 0.93802 1.01583 1.01331 1.21770 0.96951 0.97198 0.86868 0.88294 1.22886 0.96224 0.90530 1.00778 1.61992 1.58497 1.01020 1.01196 1.22120 0.97405 1.02633 0.88051 1.22930 0.97215 0.97324 1.02515 1.23160 1.03277 0.97429 0.95716 1.19667 0.90295 0.93286 0.87632 1.02929 1.21324 1.31038 0.95795 1.06904 0.92313 1.25682 0.95299 1.02404 0.95236 1.69988 1.37953 1.36977 1.11112 0.85555 0.78057 0.79883 0.78140 1.20105 1.21076 1.19513 1.21929 0.98506 0.85434 0.99046 1.60937 1.15557 1.15881 1.39535 0.93868 0.91042 0.92782 0.97258 0.89173 0.92600 0.89437 0.88804 0.87399 0.87810 0.92930 0.90766 0.93422 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.84 71.98 0.64 -3.43 16 2 C 0.08 2.77 3.69 44.92 0.17 2.94 16 3 H 0.10 2.76 8.14 -2.38 -0.02 2.75 16 4 C 0.03 0.89 4.83 86.31 0.42 1.31 16 5 N -0.50 -21.26 3.99 -849.78 -3.39 -24.66 16 6 C 0.01 0.28 4.24 44.92 0.19 0.47 16 7 C -0.16 -5.47 10.02 30.60 0.31 -5.16 16 8 C -0.16 -4.57 9.71 30.60 0.30 -4.27 16 9 C 0.20 10.18 1.88 44.17 0.08 10.26 16 10 H -0.05 -2.71 8.14 -2.39 -0.02 -2.73 16 11 C -0.51 -28.23 8.06 25.60 0.21 -28.03 16 12 H 0.06 3.26 6.92 -2.91 -0.02 3.24 16 13 C 0.01 0.69 5.30 84.65 0.45 1.14 16 14 N -0.92 -52.96 11.34 21.45 0.24 -52.72 16 15 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 C 0.08 3.95 5.38 86.31 0.46 4.41 16 20 N -0.69 -27.89 6.70 -491.11 -3.29 -31.18 16 21 H 0.04 1.67 5.94 -2.39 -0.01 1.66 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.09 2.69 6.54 -2.39 -0.02 2.67 16 26 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 27 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.10 2.74 6.96 -2.39 -0.02 2.72 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.07 4.11 6.12 -2.39 -0.01 4.09 16 33 H 0.05 2.42 6.35 -2.39 -0.02 2.40 16 34 H 0.33 13.10 8.89 -89.70 -0.80 12.31 16 Total: -1.00 -59.63 264.03 -0.92 -60.54 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.28 Total: 22.28 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 3.22 Total: -20.37 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -6.44 Total: -108.56 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -59.63 -0.92 -60.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251663950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.661 kcal (2) G-P(sol) polarization free energy of solvation -59.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds