Wall clock time and date at job start Mon Mar 30 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50744 * 2 1 4 4 C 1.53056 * 109.48454 * 239.95183 * 2 1 3 5 5 N 1.46956 * 109.38342 * 298.44322 * 4 2 1 6 6 C 1.46897 * 111.00174 * 176.80239 * 5 4 2 7 7 C 1.53001 * 117.49890 * 243.74927 * 6 5 4 8 8 C 1.52998 * 117.49982 * 175.09176 * 6 5 4 9 9 C 1.46954 * 110.88102 * 300.67443 * 5 4 2 10 10 C 1.53042 * 109.36722 * 59.31806 * 9 5 4 11 11 H 1.09002 * 109.49013 * 61.56846 * 10 9 5 12 12 C 1.50706 * 109.49002 * 181.61324 * 10 9 5 13 13 H 1.08001 * 120.00014 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00275 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99674 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00181 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47203 * 59.99912 * 16 14 12 18 18 H 1.48506 * 109.47309 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47250 * 299.99675 * 16 14 12 20 20 N 1.46956 * 109.36474 * 301.60143 * 10 9 5 21 21 H 1.08996 * 109.47449 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46757 * 300.04728 * 1 2 3 23 23 H 1.09004 * 109.47244 * 60.04772 * 1 2 3 24 24 H 1.09002 * 109.48813 * 178.46599 * 4 2 1 25 25 H 1.09002 * 109.48870 * 58.42488 * 4 2 1 26 26 H 1.09004 * 115.54907 * 29.41600 * 6 5 4 27 27 H 1.08999 * 117.49920 * 359.97438 * 7 6 5 28 28 H 1.08999 * 117.50183 * 145.01869 * 7 6 5 29 29 H 1.09003 * 117.49594 * 214.98155 * 8 6 5 30 30 H 1.08997 * 117.49978 * 359.97438 * 8 6 5 31 31 H 1.09005 * 109.48958 * 179.28923 * 9 5 4 32 32 H 1.09002 * 109.48670 * 299.34750 * 9 5 4 33 33 H 0.97005 * 119.99764 * 180.02562 * 15 14 12 34 34 H 1.00901 * 111.00009 * 295.44794 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0405 -0.7225 -1.2490 5 7 1.5808 -2.1181 -1.2273 6 6 1.9875 -2.8255 -2.4488 7 6 0.8793 -3.3315 -3.3744 8 6 1.6854 -4.3231 -2.5317 9 6 2.0710 -2.8125 -0.0285 10 6 1.5605 -2.0905 1.2206 11 1 0.4708 -2.1143 1.2346 12 6 2.0941 -2.7771 2.4515 13 1 2.7332 -3.6421 2.3532 14 6 1.7657 -2.3014 3.7033 15 7 0.9871 -1.2483 3.8231 16 14 2.4265 -3.1528 5.2290 17 1 3.9110 -3.1194 5.2106 18 1 1.9300 -2.4526 6.4408 19 1 1.9633 -4.5636 5.2484 20 7 2.0203 -0.6949 1.1989 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5146 0.8896 23 1 -0.3634 0.5131 -0.8904 24 1 3.1302 -0.6988 -1.2629 25 1 1.6546 -0.2262 -2.1395 26 1 2.9081 -2.4713 -2.9127 27 1 -0.1516 -3.1399 -3.0767 28 1 1.0709 -3.3106 -4.4472 29 1 2.4071 -4.9541 -3.0505 30 1 1.1852 -4.7835 -1.6798 31 1 1.7070 -3.8400 -0.0290 32 1 3.1610 -2.8126 -0.0286 33 1 0.7563 -0.9135 4.7038 34 1 3.0262 -0.6446 1.2600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251808069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:24 Heat of formation + Delta-G solvation = 37.796998 kcal Electronic energy + Delta-G solvation = -14651.855053 eV Core-core repulsion = 12392.492606 eV Total energy + Delta-G solvation = -2259.362446 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91158 -36.28872 -32.90720 -31.76061 -30.34476 -26.81919 -25.20380 -23.75371 -22.23611 -21.01476 -20.25121 -18.24356 -16.79788 -15.84143 -14.75120 -14.51940 -14.13346 -13.77793 -13.47676 -13.20683 -12.81559 -12.17549 -11.88178 -11.32286 -11.09534 -11.00180 -10.82652 -10.74366 -10.64092 -10.41310 -10.14658 -10.08384 -9.78035 -9.42422 -8.89598 -8.34757 -7.72173 -6.74037 -5.83792 -3.98359 3.36822 3.41945 3.43937 4.05263 4.29487 4.53094 5.16850 5.22482 5.28034 5.44905 5.59118 5.75615 5.83188 5.84319 5.93407 6.04546 6.14216 6.22896 6.33155 6.38300 6.49455 6.53561 6.67744 6.87160 7.00632 7.23654 7.43590 7.72272 7.80156 7.95732 8.28670 8.65449 8.98849 9.16995 9.69750 11.20265 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.009992 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.179148 B = 2801.508649 C = 3305.398572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.082 3.918 3 H 0.063 0.937 4 C 0.029 3.971 5 N -0.505 5.505 6 C 0.008 3.992 7 C -0.168 4.168 8 C -0.179 4.179 9 C 0.031 3.969 10 C 0.225 3.775 11 H 0.052 0.948 12 C -0.541 4.541 13 H 0.051 0.949 14 C 0.085 3.915 15 N -0.844 5.844 16 Si 0.883 3.117 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.279 1.279 20 N -0.644 5.644 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.033 0.967 24 H 0.020 0.980 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.256 0.744 34 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -0.721 -10.362 10.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 H 0.081 0.919 4 C -0.101 4.101 5 N -0.229 5.229 6 C -0.101 4.101 7 C -0.206 4.206 8 C -0.217 4.217 9 C -0.098 4.098 10 C 0.117 3.883 11 H 0.069 0.931 12 C -0.580 4.580 13 H 0.070 0.930 14 C -0.122 4.122 15 N -0.478 5.478 16 Si 0.710 3.290 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.204 1.204 20 N -0.272 5.272 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.047 -0.334 -9.776 9.782 hybrid contribution 1.971 -0.861 0.017 2.151 sum 1.924 -1.195 -9.759 10.018 Atomic orbital electron populations 1.21591 0.94630 1.02498 0.99398 1.21633 0.96598 0.96423 0.88259 0.91910 1.22932 0.96525 0.89772 1.00908 1.61986 1.58733 1.01513 1.00641 1.22465 0.97182 0.95219 0.95279 1.23032 0.97875 1.03636 0.96081 1.23047 1.03640 0.91942 1.03061 1.23132 0.96484 0.98936 0.91240 1.19214 0.97115 0.83172 0.88754 0.93066 1.20880 1.33077 1.13681 0.90401 0.93035 1.24925 0.94466 0.94397 0.98432 1.70105 1.33469 1.21607 1.22643 0.86855 0.79309 0.79743 0.83055 1.20481 1.21378 1.20444 1.61095 1.14134 1.17738 1.34213 0.91605 0.92600 0.94817 0.96184 0.91967 0.90243 0.88379 0.89533 0.89336 0.88146 0.91603 0.96486 0.93429 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.84 37.16 0.33 -2.11 16 2 C 0.08 1.63 3.70 -67.63 -0.25 1.38 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.03 0.52 4.98 -3.76 -0.02 0.50 16 5 N -0.50 -9.45 4.19 -226.49 -0.95 -10.40 16 6 C 0.01 0.13 5.42 -67.71 -0.37 -0.24 16 7 C -0.17 -2.30 10.46 -26.70 -0.28 -2.58 16 8 C -0.18 -2.56 9.71 -26.70 -0.26 -2.82 16 9 C 0.03 0.66 4.62 -3.77 -0.02 0.64 16 10 C 0.23 5.59 2.07 -68.81 -0.14 5.45 16 11 H 0.05 1.43 6.34 -51.93 -0.33 1.10 16 12 C -0.54 -14.77 8.69 -34.44 -0.30 -15.06 16 13 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 14 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 15 N -0.84 -24.33 12.78 55.43 0.71 -23.62 16 16 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 N -0.64 -15.14 5.67 -100.79 -0.57 -15.71 16 21 H 0.06 1.42 5.94 -51.93 -0.31 1.12 16 22 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 27 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.56 6.96 -51.93 -0.36 1.20 16 31 H 0.07 1.41 6.54 -51.93 -0.34 1.07 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.32 7.43 8.79 -39.29 -0.35 7.09 16 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -28.03 269.32 -8.62 -36.65 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.45 Total: 5.45 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -1.40 Total: -12.60 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.81 Total: -49.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.03 -8.62 -36.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251808069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.446 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds