Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50744 * 2 1 4 4 C 1.53056 * 109.48454 * 239.95183 * 2 1 3 5 5 N 1.46956 * 109.38342 * 298.44322 * 4 2 1 6 6 C 1.46897 * 111.00174 * 176.80239 * 5 4 2 7 7 C 1.53001 * 117.49890 * 243.74927 * 6 5 4 8 8 C 1.52998 * 117.49982 * 175.09176 * 6 5 4 9 9 C 1.46954 * 110.88102 * 300.67443 * 5 4 2 10 10 C 1.53042 * 109.36722 * 59.31806 * 9 5 4 11 11 H 1.09002 * 109.49013 * 61.56846 * 10 9 5 12 12 C 1.50706 * 109.49002 * 181.61324 * 10 9 5 13 13 H 1.08001 * 120.00014 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00275 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99674 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00181 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47203 * 59.99912 * 16 14 12 18 18 H 1.48506 * 109.47309 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47250 * 299.99675 * 16 14 12 20 20 N 1.46956 * 109.36474 * 301.60143 * 10 9 5 21 21 H 1.08996 * 109.47449 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46757 * 300.04728 * 1 2 3 23 23 H 1.09004 * 109.47244 * 60.04772 * 1 2 3 24 24 H 1.09002 * 109.48813 * 178.46599 * 4 2 1 25 25 H 1.09002 * 109.48870 * 58.42488 * 4 2 1 26 26 H 1.09004 * 115.54907 * 29.41600 * 6 5 4 27 27 H 1.08999 * 117.49920 * 359.97438 * 7 6 5 28 28 H 1.08999 * 117.50183 * 145.01869 * 7 6 5 29 29 H 1.09003 * 117.49594 * 214.98155 * 8 6 5 30 30 H 1.08997 * 117.49978 * 359.97438 * 8 6 5 31 31 H 1.09005 * 109.48958 * 179.28923 * 9 5 4 32 32 H 1.09002 * 109.48670 * 299.34750 * 9 5 4 33 33 H 0.97005 * 119.99764 * 180.02562 * 15 14 12 34 34 H 1.00901 * 111.00009 * 295.44794 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0405 -0.7225 -1.2490 5 7 1.5808 -2.1181 -1.2273 6 6 1.9875 -2.8255 -2.4488 7 6 0.8793 -3.3315 -3.3744 8 6 1.6854 -4.3231 -2.5317 9 6 2.0710 -2.8125 -0.0285 10 6 1.5605 -2.0905 1.2206 11 1 0.4708 -2.1143 1.2346 12 6 2.0941 -2.7771 2.4515 13 1 2.7332 -3.6421 2.3532 14 6 1.7657 -2.3014 3.7033 15 7 0.9871 -1.2483 3.8231 16 14 2.4265 -3.1528 5.2290 17 1 3.9110 -3.1194 5.2106 18 1 1.9300 -2.4526 6.4408 19 1 1.9633 -4.5636 5.2484 20 7 2.0203 -0.6949 1.1989 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5146 0.8896 23 1 -0.3634 0.5131 -0.8904 24 1 3.1302 -0.6988 -1.2629 25 1 1.6546 -0.2262 -2.1395 26 1 2.9081 -2.4713 -2.9127 27 1 -0.1516 -3.1399 -3.0767 28 1 1.0709 -3.3106 -4.4472 29 1 2.4071 -4.9541 -3.0505 30 1 1.1852 -4.7835 -1.6798 31 1 1.7070 -3.8400 -0.0290 32 1 3.1610 -2.8126 -0.0286 33 1 0.7563 -0.9135 4.7038 34 1 3.0262 -0.6446 1.2600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251808069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = 18.769852 kcal Electronic energy + Delta-G solvation = -14652.680132 eV Core-core repulsion = 12392.492606 eV Total energy + Delta-G solvation = -2260.187525 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44944 -37.67394 -34.87424 -33.28116 -32.21963 -28.55323 -27.10744 -25.31239 -23.57780 -22.59619 -21.60650 -19.93827 -18.65859 -17.38316 -16.53000 -16.05568 -15.79210 -15.38591 -15.16969 -14.79544 -14.26480 -14.09547 -13.31806 -12.96727 -12.76456 -12.63973 -12.60205 -12.41966 -12.22585 -12.06920 -11.67814 -11.55738 -11.32528 -11.05690 -10.82157 -10.45429 -9.19265 -8.51811 -7.94456 -6.16220 1.45455 1.45869 1.53264 2.47217 2.83726 3.01031 3.25582 3.86587 4.01403 4.07420 4.17930 4.26162 4.36685 4.47154 4.50289 4.62826 4.75595 4.81119 4.86810 4.93318 4.97492 5.09031 5.17788 5.33506 5.36300 5.54770 5.60421 5.75519 6.12983 6.27810 6.34504 6.68176 7.14559 7.16133 7.55768 9.08154 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.009992 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.179148 B = 2801.508649 C = 3305.398572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.078 3.922 3 H 0.080 0.920 4 C 0.037 3.963 5 N -0.513 5.513 6 C -0.015 4.015 7 C -0.148 4.148 8 C -0.178 4.178 9 C 0.049 3.951 10 C 0.231 3.769 11 H 0.013 0.987 12 C -0.559 4.559 13 H 0.047 0.953 14 C 0.038 3.962 15 N -0.875 5.875 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.662 5.662 21 H 0.040 0.960 22 H 0.032 0.968 23 H 0.066 0.934 24 H 0.023 0.977 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.009 0.991 33 H 0.255 0.745 34 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 -0.892 -11.924 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.033 4.033 3 H 0.098 0.902 4 C -0.093 4.093 5 N -0.237 5.237 6 C -0.124 4.124 7 C -0.185 4.185 8 C -0.216 4.216 9 C -0.081 4.081 10 C 0.123 3.877 11 H 0.031 0.969 12 C -0.598 4.598 13 H 0.066 0.934 14 C -0.166 4.166 15 N -0.510 5.510 16 Si 0.773 3.227 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.200 1.200 20 N -0.291 5.291 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.064 0.936 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.630 -0.512 -11.359 11.388 hybrid contribution 1.725 -0.799 0.443 1.952 sum 2.356 -1.312 -10.916 11.244 Atomic orbital electron populations 1.21477 0.94752 1.00969 0.99859 1.21744 0.96426 0.97139 0.87958 0.90185 1.22826 0.96671 0.89225 1.00592 1.61923 1.59006 1.01992 1.00810 1.22612 0.98917 0.96170 0.94667 1.23084 0.96576 1.01561 0.97307 1.23092 1.04175 0.91402 1.02911 1.22726 0.95554 0.98337 0.91463 1.18897 0.94729 0.84378 0.89717 0.96866 1.21248 1.32882 1.13804 0.91870 0.93432 1.25633 0.94710 0.95011 1.01251 1.70241 1.34702 1.23005 1.23079 0.85830 0.78753 0.78708 0.79426 1.19930 1.21152 1.19969 1.60884 1.13917 1.17240 1.37029 0.94059 0.94860 0.91506 0.95882 0.89405 0.88955 0.89377 0.86471 0.86960 0.90056 0.92299 0.97293 0.93643 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 8.84 71.98 0.64 -3.79 16 2 C 0.08 3.02 3.70 44.92 0.17 3.19 16 3 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 4 C 0.04 1.24 4.98 86.31 0.43 1.67 16 5 N -0.51 -18.63 4.19 -870.48 -3.65 -22.28 16 6 C -0.01 -0.44 5.42 44.92 0.24 -0.19 16 7 C -0.15 -3.58 10.46 30.62 0.32 -3.26 16 8 C -0.18 -4.71 9.71 30.62 0.30 -4.42 16 9 C 0.05 2.09 4.62 86.31 0.40 2.49 16 10 C 0.23 11.76 2.07 44.17 0.09 11.86 16 11 H 0.01 0.78 6.34 -2.39 -0.02 0.77 16 12 C -0.56 -31.13 8.69 25.60 0.22 -30.91 16 13 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 14 C 0.04 2.14 5.39 84.65 0.46 2.59 16 15 N -0.87 -51.53 12.78 21.45 0.27 -51.25 16 16 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 N -0.66 -31.57 5.67 -472.80 -2.68 -34.25 16 21 H 0.04 1.80 5.94 -2.39 -0.01 1.79 16 22 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.09 2.51 8.04 -2.38 -0.02 2.49 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 2.47 6.96 -2.39 -0.02 2.46 16 31 H 0.06 2.56 6.54 -2.38 -0.02 2.55 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 34 H 0.32 14.92 8.79 -89.69 -0.79 14.14 16 Total: -1.00 -60.67 269.32 -0.48 -61.15 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.28 Total: 21.38 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 3.26 Total: -20.77 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -6.05 Total: -107.78 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -60.67 -0.48 -61.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251808069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.920 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds