Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47144 * 2 1 4 4 H 1.08996 * 109.78033 * 54.57094 * 3 2 1 5 5 C 1.53735 * 109.77005 * 293.81786 * 3 2 1 6 6 H 1.08996 * 113.05056 * 20.40039 * 5 3 2 7 7 C 1.53689 * 109.31949 * 146.60978 * 5 3 2 8 8 N 1.47050 * 107.98040 * 127.62722 * 7 5 3 9 9 C 1.47166 * 109.20675 * 0.79610 * 8 7 5 10 10 C 1.53923 * 106.68343 * 341.67511 * 9 8 7 11 11 H 1.08998 * 112.98058 * 150.87902 * 10 9 8 12 12 C 1.53959 * 109.27202 * 278.36609 * 10 9 8 13 13 N 1.46668 * 109.76986 * 175.33062 * 3 2 1 14 14 C 1.36937 * 125.33709 * 300.10777 * 13 3 2 15 15 H 1.08005 * 120.00150 * 10.31764 * 14 13 3 16 16 C 1.38817 * 120.00088 * 190.30969 * 14 13 3 17 17 N 1.31617 * 119.99582 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99890 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47395 * 90.00570 * 18 16 14 20 20 H 1.48504 * 109.46960 * 210.00029 * 18 16 14 21 21 H 1.48497 * 109.47195 * 330.00032 * 18 16 14 22 22 H 1.08996 * 109.47027 * 185.84474 * 1 2 3 23 23 H 1.09004 * 109.46946 * 305.84369 * 1 2 3 24 24 H 1.08997 * 109.47341 * 65.84254 * 1 2 3 25 25 H 1.09004 * 109.46475 * 240.00287 * 2 1 3 26 26 H 1.08998 * 109.47148 * 120.00122 * 2 1 3 27 27 H 1.09001 * 109.76667 * 7.99354 * 7 5 3 28 28 H 1.09000 * 109.77107 * 247.26766 * 7 5 3 29 29 H 1.00902 * 111.00255 * 123.49280 * 8 7 5 30 30 H 1.08999 * 110.01565 * 100.97745 * 9 8 7 31 31 H 1.08991 * 110.01631 * 222.37195 * 9 8 7 32 32 H 1.09003 * 110.03158 * 257.62540 * 12 10 9 33 33 H 1.09003 * 110.03476 * 19.05185 * 12 10 9 34 34 H 0.97006 * 119.99457 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6024 1.9885 0.8357 5 6 1.6626 2.1276 -1.3235 6 1 0.8403 1.6331 -1.8406 7 6 1.3851 3.6168 -1.0642 8 7 2.2025 4.4009 -2.0020 9 6 2.9717 3.4834 -2.8578 10 6 2.9810 2.1186 -2.1461 11 1 3.0505 1.2787 -2.8373 12 6 4.0757 2.1175 -1.0635 13 7 3.5024 1.4517 0.1124 14 6 4.2202 0.9228 1.1516 15 1 3.7277 0.3079 1.8905 16 6 5.5810 1.1766 1.2555 17 7 6.1811 1.9262 0.3553 18 14 6.5603 0.4544 2.6728 19 1 7.0910 -0.8759 2.2807 20 1 7.6898 1.3593 3.0058 21 1 5.6788 0.3059 3.8586 22 1 -0.3633 -1.0223 0.1046 23 1 -0.3633 0.6018 0.8331 24 1 -0.3634 0.4205 -0.9376 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 1.6560 3.8692 -0.0390 28 1 0.3288 3.8292 -1.2292 29 1 1.6264 5.0157 -2.5572 30 1 2.4926 3.3925 -3.8326 31 1 3.9914 3.8497 -2.9754 32 1 4.9483 1.5673 -1.4155 33 1 4.3550 3.1411 -0.8138 34 1 7.1320 2.1039 0.4281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251826256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = 20.859498 kcal Electronic energy + Delta-G solvation = -14867.473922 eV Core-core repulsion = 12607.377010 eV Total energy + Delta-G solvation = -2260.096911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.38348 -35.23542 -33.06798 -31.14629 -29.21773 -28.77547 -25.20807 -24.72733 -21.84266 -20.91385 -19.73657 -18.67474 -16.71127 -16.43208 -14.72470 -14.23745 -14.01266 -13.37911 -13.12733 -12.94736 -12.58873 -12.42163 -11.94819 -11.63741 -11.36597 -10.96225 -10.92289 -10.81902 -10.58943 -10.42862 -10.03535 -9.88483 -9.69287 -9.48206 -9.40646 -8.48266 -7.95432 -6.68946 -5.64161 -2.98222 3.43868 3.49046 3.51069 4.55356 4.72561 5.10796 5.18899 5.38296 5.57938 5.61893 5.70289 5.73314 5.78937 5.94472 6.00457 6.06771 6.22820 6.34760 6.43824 6.51335 6.54449 6.59186 6.59938 6.90398 6.99484 7.18886 7.36521 7.68023 7.77804 7.82450 7.95049 8.39282 9.31582 9.92885 10.59671 11.47142 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030850 B = 0.012177 C = 0.009511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.391250 B = 2298.808070 C = 2943.110016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.175 3.825 4 H 0.032 0.968 5 C -0.115 4.115 6 H 0.078 0.922 7 C 0.062 3.938 8 N -0.681 5.681 9 C 0.062 3.938 10 C -0.126 4.126 11 H 0.077 0.923 12 C 0.187 3.813 13 N -0.595 5.595 14 C -0.225 4.225 15 H 0.075 0.925 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.909 3.091 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.329 0.671 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 0.563 -5.083 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.067 3.933 4 H 0.050 0.950 5 C -0.135 4.135 6 H 0.096 0.904 7 C -0.067 4.067 8 N -0.310 5.310 9 C -0.067 4.067 10 C -0.146 4.146 11 H 0.096 0.904 12 C 0.062 3.938 13 N -0.319 5.319 14 C -0.354 4.354 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.144 0.856 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.751 0.723 -4.533 9.882 hybrid contribution -0.156 -0.747 0.126 0.773 sum -8.908 -0.024 -4.407 9.938 Atomic orbital electron populations 1.21797 0.97356 1.00399 1.00926 1.22035 0.93592 0.99995 1.01816 1.20721 0.86615 0.92569 0.93373 0.95017 1.22941 0.97420 0.95553 0.97584 0.90393 1.22479 0.94249 0.91704 0.98273 1.61326 1.28420 1.20934 1.20274 1.22432 0.98782 0.92122 0.93358 1.23254 0.97569 0.95643 0.98143 0.90426 1.21138 0.91838 0.97422 0.83360 1.44262 0.98705 1.67739 1.21177 1.18980 0.90578 1.23935 1.01885 0.90732 1.24834 0.97037 0.99768 0.98700 1.69965 1.09673 1.41571 1.35308 0.86165 0.79831 0.78101 0.81949 1.21747 1.21712 1.20739 0.93794 0.93209 0.93426 0.92795 0.92114 0.90489 0.94331 0.85622 0.95289 0.90421 0.92046 0.94289 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.64 37.16 0.36 -1.80 16 2 C -0.13 -2.52 5.47 -26.73 -0.15 -2.66 16 3 C 0.18 3.66 2.60 -67.45 -0.18 3.49 16 4 H 0.03 0.70 7.43 -51.93 -0.39 0.31 16 5 C -0.12 -2.07 3.26 -88.60 -0.29 -2.35 16 6 H 0.08 1.24 6.44 -51.93 -0.33 0.91 16 7 C 0.06 1.05 6.96 -3.38 -0.02 1.03 16 8 N -0.68 -11.37 7.33 -112.54 -0.82 -12.20 16 9 C 0.06 1.05 6.73 -3.20 -0.02 1.03 16 10 C -0.13 -2.44 4.16 -88.36 -0.37 -2.81 16 11 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 12 C 0.19 4.65 4.66 -3.39 -0.02 4.64 16 13 N -0.60 -15.32 3.12 -164.28 -0.51 -15.84 16 14 C -0.23 -6.34 9.75 -15.06 -0.15 -6.49 16 15 H 0.07 2.04 7.37 -52.48 -0.39 1.65 16 16 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 17 N -0.92 -27.44 10.39 55.49 0.58 -26.87 16 18 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.64 6.69 -51.93 -0.35 0.29 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 1.23 7.44 -51.93 -0.39 0.84 16 27 H 0.08 1.50 7.29 -51.93 -0.38 1.12 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.33 4.45 8.90 -39.29 -0.35 4.10 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 32 H 0.06 1.71 6.92 -51.93 -0.36 1.35 16 33 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -30.15 261.53 -8.17 -38.32 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.40 Total: 1.39 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.92 Total: -6.22 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.76 Total: -54.90 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.15 -8.17 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251826256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.182 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds