Wall clock time and date at job start Mon Mar 30 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47144 * 2 1 4 4 H 1.08996 * 109.78033 * 54.57094 * 3 2 1 5 5 C 1.53735 * 109.77005 * 293.81786 * 3 2 1 6 6 H 1.08996 * 113.05056 * 20.40039 * 5 3 2 7 7 C 1.53689 * 109.31949 * 146.60978 * 5 3 2 8 8 N 1.47050 * 107.98040 * 127.62722 * 7 5 3 9 9 C 1.47166 * 109.20675 * 0.79610 * 8 7 5 10 10 C 1.53923 * 106.68343 * 341.67511 * 9 8 7 11 11 H 1.08998 * 112.98058 * 150.87902 * 10 9 8 12 12 C 1.53959 * 109.27202 * 278.36609 * 10 9 8 13 13 N 1.46668 * 109.76986 * 175.33062 * 3 2 1 14 14 C 1.36937 * 125.33709 * 300.10777 * 13 3 2 15 15 H 1.08005 * 120.00150 * 10.31764 * 14 13 3 16 16 C 1.38817 * 120.00088 * 190.30969 * 14 13 3 17 17 N 1.31617 * 119.99582 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99890 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47395 * 90.00570 * 18 16 14 20 20 H 1.48504 * 109.46960 * 210.00029 * 18 16 14 21 21 H 1.48497 * 109.47195 * 330.00032 * 18 16 14 22 22 H 1.08996 * 109.47027 * 185.84474 * 1 2 3 23 23 H 1.09004 * 109.46946 * 305.84369 * 1 2 3 24 24 H 1.08997 * 109.47341 * 65.84254 * 1 2 3 25 25 H 1.09004 * 109.46475 * 240.00287 * 2 1 3 26 26 H 1.08998 * 109.47148 * 120.00122 * 2 1 3 27 27 H 1.09001 * 109.76667 * 7.99354 * 7 5 3 28 28 H 1.09000 * 109.77107 * 247.26766 * 7 5 3 29 29 H 1.00902 * 111.00255 * 123.49280 * 8 7 5 30 30 H 1.08999 * 110.01565 * 100.97745 * 9 8 7 31 31 H 1.08991 * 110.01631 * 222.37195 * 9 8 7 32 32 H 1.09003 * 110.03158 * 257.62540 * 12 10 9 33 33 H 1.09003 * 110.03476 * 19.05185 * 12 10 9 34 34 H 0.97006 * 119.99457 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6024 1.9885 0.8357 5 6 1.6626 2.1276 -1.3235 6 1 0.8403 1.6331 -1.8406 7 6 1.3851 3.6168 -1.0642 8 7 2.2025 4.4009 -2.0020 9 6 2.9717 3.4834 -2.8578 10 6 2.9810 2.1186 -2.1461 11 1 3.0505 1.2787 -2.8373 12 6 4.0757 2.1175 -1.0635 13 7 3.5024 1.4517 0.1124 14 6 4.2202 0.9228 1.1516 15 1 3.7277 0.3079 1.8905 16 6 5.5810 1.1766 1.2555 17 7 6.1811 1.9262 0.3553 18 14 6.5603 0.4544 2.6728 19 1 7.0910 -0.8759 2.2807 20 1 7.6898 1.3593 3.0058 21 1 5.6788 0.3059 3.8586 22 1 -0.3633 -1.0223 0.1046 23 1 -0.3633 0.6018 0.8331 24 1 -0.3634 0.4205 -0.9376 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 1.6560 3.8692 -0.0390 28 1 0.3288 3.8292 -1.2292 29 1 1.6264 5.0157 -2.5572 30 1 2.4926 3.3925 -3.8326 31 1 3.9914 3.8497 -2.9754 32 1 4.9483 1.5673 -1.4155 33 1 4.3550 3.1411 -0.8138 34 1 7.1320 2.1039 0.4281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251826256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:42 Heat of formation + Delta-G solvation = -0.425191 kcal Electronic energy + Delta-G solvation = -14868.396895 eV Core-core repulsion = 12607.377010 eV Total energy + Delta-G solvation = -2261.019885 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95670 -36.85703 -34.87094 -32.93465 -30.89785 -30.31813 -26.81602 -26.64649 -23.46026 -22.35926 -21.49668 -20.25701 -18.67971 -17.91505 -16.71308 -15.83064 -15.58008 -15.02592 -14.80789 -14.55668 -14.11351 -13.80675 -13.59338 -13.14263 -13.06752 -12.79351 -12.62981 -12.48295 -12.16976 -12.07746 -11.76835 -11.70732 -11.36613 -11.28138 -11.01509 -10.63311 -9.22919 -8.78530 -7.82605 -5.18412 1.43482 1.45659 1.54321 2.49944 3.32814 3.42239 3.59395 3.66622 3.96159 4.09532 4.32913 4.36466 4.47242 4.51101 4.59025 4.72572 4.74286 4.81959 4.94351 5.07380 5.10672 5.17706 5.23615 5.45135 5.47640 5.52646 5.63855 5.73255 5.86241 6.05844 6.27827 6.70032 7.15144 7.85636 8.49560 9.27512 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030850 B = 0.012177 C = 0.009511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.391250 B = 2298.808070 C = 2943.110016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.165 3.835 4 H 0.021 0.979 5 C -0.102 4.102 6 H 0.115 0.885 7 C 0.066 3.934 8 N -0.698 5.698 9 C 0.070 3.930 10 C -0.122 4.122 11 H 0.091 0.909 12 C 0.200 3.800 13 N -0.616 5.616 14 C -0.235 4.235 15 H 0.077 0.923 16 C -0.067 4.067 17 N -0.949 5.949 18 Si 0.975 3.025 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.270 1.270 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.351 0.649 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.019 0.981 33 H -0.003 1.003 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 0.163 -5.902 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.039 0.961 5 C -0.121 4.121 6 H 0.133 0.867 7 C -0.063 4.063 8 N -0.329 5.329 9 C -0.059 4.059 10 C -0.142 4.142 11 H 0.109 0.891 12 C 0.075 3.925 13 N -0.340 5.340 14 C -0.364 4.364 15 H 0.095 0.905 16 C -0.260 4.260 17 N -0.598 5.598 18 Si 0.803 3.197 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.195 1.195 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.169 0.831 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.015 0.985 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.267 0.319 -5.357 12.480 hybrid contribution 0.595 -0.609 0.400 0.941 sum -10.672 -0.290 -4.957 11.771 Atomic orbital electron populations 1.21714 0.93571 1.01917 1.02265 1.21898 0.96790 0.97626 1.00348 1.20989 0.83823 0.94378 0.94944 0.96120 1.22964 0.97452 0.96282 0.95442 0.86696 1.22366 0.96450 0.90907 0.96578 1.61122 1.29310 1.21452 1.20997 1.22309 0.98511 0.90259 0.94837 1.23151 0.96113 0.97910 0.97063 0.89066 1.20778 0.92704 0.94052 0.84973 1.44579 1.01103 1.67373 1.20988 1.19341 0.91136 1.23501 1.02459 0.90523 1.25672 0.98206 1.00804 1.01337 1.70206 1.09347 1.43230 1.37043 0.85131 0.78124 0.77147 0.79280 1.21238 1.22175 1.19462 0.92065 0.92812 0.91289 0.93362 0.94580 0.94030 0.90239 0.83146 0.91203 0.92383 0.96229 0.98538 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.64 71.98 0.69 -2.82 16 2 C -0.13 -4.56 5.47 30.60 0.17 -4.40 16 3 C 0.17 6.81 2.60 45.21 0.12 6.93 16 4 H 0.02 0.91 7.43 -2.39 -0.02 0.89 16 5 C -0.10 -3.39 3.26 -9.49 -0.03 -3.42 16 6 H 0.12 3.05 6.44 -2.39 -0.02 3.03 16 7 C 0.07 2.07 6.96 86.51 0.60 2.68 16 8 N -0.70 -21.78 7.33 -509.98 -3.74 -25.52 16 9 C 0.07 2.23 6.73 86.56 0.58 2.81 16 10 C -0.12 -4.60 4.16 -9.33 -0.04 -4.64 16 11 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 12 C 0.20 10.35 4.66 86.65 0.40 10.75 16 13 N -0.62 -32.63 3.12 -673.67 -2.10 -34.74 16 14 C -0.24 -13.62 9.75 84.03 0.82 -12.81 16 15 H 0.08 4.28 7.37 -2.91 -0.02 4.26 16 16 C -0.07 -3.98 5.48 84.86 0.46 -3.51 16 17 N -0.95 -59.48 10.39 21.65 0.22 -59.26 16 18 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.07 1.50 6.69 -2.39 -0.02 1.48 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.04 1.44 7.44 -2.39 -0.02 1.42 16 27 H 0.04 1.60 7.29 -2.39 -0.02 1.58 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.35 8.27 8.90 -89.69 -0.80 7.48 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 2.07 7.95 -2.39 -0.02 2.05 16 32 H 0.02 1.14 6.92 -2.39 -0.02 1.13 16 33 H 0.00 -0.20 7.50 -2.39 -0.02 -0.22 16 34 H 0.24 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -68.88 261.53 0.47 -68.41 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.28 Total: 10.05 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 3.78 Total: -8.44 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -5.62 Total: -119.51 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -68.88 0.47 -68.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251826256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.984 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds