Wall clock time and date at job start Mon Mar 30 2020 03:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.40400 * 2 1 4 4 C 1.53812 * 109.40518 * 240.16770 * 2 1 3 5 5 N 1.45777 * 107.76951 * 188.51467 * 4 2 1 6 6 C 1.47161 * 116.15827 * 183.19532 * 5 4 2 7 7 C 1.55152 * 103.58281 * 197.70981 * 6 5 4 8 8 C 1.54938 * 104.94528 * 23.98999 * 7 6 5 9 9 C 1.48788 * 109.49960 * 66.16866 * 5 4 2 10 10 H 1.09001 * 110.51735 * 49.43404 * 9 5 4 11 11 C 1.52553 * 107.26340 * 289.01112 * 9 5 4 12 12 N 1.46852 * 109.40538 * 119.76103 * 2 1 3 13 13 C 1.36933 * 120.22519 * 346.95801 * 12 2 1 14 14 H 1.08002 * 119.99655 * 29.44138 * 13 12 2 15 15 C 1.38807 * 120.00304 * 209.43865 * 13 12 2 16 16 N 1.31618 * 120.00077 * 12.70730 * 15 13 12 17 17 Si 1.86796 * 120.00197 * 192.71056 * 15 13 12 18 18 H 1.48506 * 109.47119 * 60.00085 * 17 15 13 19 19 H 1.48507 * 109.47232 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47237 * 299.99866 * 17 15 13 21 21 H 1.08992 * 109.46830 * 179.83634 * 1 2 3 22 22 H 1.08993 * 109.47073 * 299.83737 * 1 2 3 23 23 H 1.08996 * 109.46758 * 59.83541 * 1 2 3 24 24 H 1.08996 * 109.79983 * 68.94385 * 4 2 1 25 25 H 1.09005 * 109.84362 * 308.10704 * 4 2 1 26 26 H 1.08996 * 110.59880 * 79.18339 * 6 5 4 27 27 H 1.09000 * 110.73318 * 316.29587 * 6 5 4 28 28 H 1.08997 * 110.34352 * 142.86305 * 7 6 5 29 29 H 1.09001 * 110.34085 * 265.12032 * 7 6 5 30 30 H 1.09003 * 110.47858 * 121.07249 * 8 7 6 31 31 H 1.08995 * 110.47933 * 243.69509 * 8 7 6 32 32 H 1.08999 * 110.01214 * 298.66814 * 11 9 5 33 33 H 1.09007 * 110.01608 * 177.24183 * 11 9 5 34 34 H 0.97000 * 120.00429 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0411 -0.7217 -1.2585 5 7 3.4838 -0.8818 -1.1246 6 6 4.1780 -1.4915 -2.2700 7 6 5.5380 -1.9418 -1.6743 8 6 5.2731 -2.1114 -0.1571 9 6 3.7782 -1.8092 0.0011 10 1 3.1820 -2.7175 -0.0863 11 6 3.4406 -1.0733 1.2940 12 7 2.0180 -0.6875 1.2024 13 6 1.1598 -0.9686 2.2318 14 1 0.1129 -1.1414 2.0302 15 6 1.6353 -1.0315 3.5344 16 7 2.8395 -0.5820 3.8178 17 14 0.5664 -1.7540 4.8851 18 1 0.2372 -3.1640 4.5549 19 1 1.2998 -1.7066 6.1755 20 1 -0.6875 -0.9666 4.9986 21 1 -0.3633 -1.0276 -0.0029 22 1 -0.3633 0.5113 0.8914 23 1 -0.3633 0.5164 -0.8885 24 1 1.8162 -0.1256 -2.1429 25 1 1.5672 -1.6998 -1.3423 26 1 4.3301 -0.7574 -3.0612 27 1 3.6212 -2.3496 -2.6464 28 1 5.8486 -2.8900 -2.1131 29 1 6.2972 -1.1782 -1.8434 30 1 5.4908 -3.1325 0.1562 31 1 5.8685 -1.4006 0.4157 32 1 4.0629 -0.1837 1.3904 33 1 3.5942 -1.7317 2.1491 34 1 3.1717 -0.6256 4.7280 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252674541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:31 Heat of formation + Delta-G solvation = 11.774181 kcal Electronic energy + Delta-G solvation = -14885.375984 eV Core-core repulsion = 12624.885104 eV Total energy + Delta-G solvation = -2260.490880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64835 -37.29852 -34.62231 -32.60075 -31.72804 -29.76527 -26.79499 -26.32145 -24.19164 -21.84014 -21.64527 -20.69546 -18.29360 -17.19168 -16.71012 -15.96064 -15.86399 -15.40495 -15.07501 -14.85619 -14.32218 -13.55733 -13.38607 -13.00066 -12.95419 -12.68536 -12.61000 -12.37347 -12.24215 -12.02293 -11.78433 -11.72851 -11.44456 -11.33570 -11.18222 -10.54588 -9.32738 -8.61524 -7.83285 -5.30875 1.45888 1.48039 1.54656 2.51609 3.12986 3.32258 3.57081 3.82521 3.96641 4.09162 4.32278 4.39081 4.46079 4.55351 4.63169 4.72840 4.76469 4.82833 4.90591 4.99415 5.04459 5.04868 5.25741 5.31529 5.35601 5.39583 5.50708 5.68562 5.73720 6.08517 6.40138 6.45086 7.17360 7.88747 8.42315 9.23889 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038378 B = 0.011199 C = 0.009236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.417849 B = 2499.717199 C = 3030.962903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.164 3.836 3 H 0.009 0.991 4 C 0.057 3.943 5 N -0.537 5.537 6 C 0.039 3.961 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.048 3.952 10 H 0.030 0.970 11 C 0.206 3.794 12 N -0.612 5.612 13 C -0.258 4.258 14 H 0.075 0.925 15 C -0.055 4.055 16 N -0.939 5.939 17 Si 0.966 3.034 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.275 1.275 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.024 0.976 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.061 0.939 32 H -0.004 1.004 33 H 0.051 0.949 34 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -3.106 -11.309 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.026 0.974 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.089 4.089 7 C -0.148 4.148 8 C -0.152 4.152 9 C -0.062 4.062 10 H 0.048 0.952 11 C 0.080 3.920 12 N -0.336 5.336 13 C -0.388 4.388 14 H 0.092 0.908 15 C -0.249 4.249 16 N -0.586 5.586 17 Si 0.794 3.206 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.201 1.201 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.042 0.958 26 H 0.109 0.891 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.014 0.986 33 H 0.069 0.931 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.941 -2.559 -11.110 11.565 hybrid contribution -0.781 -0.870 1.084 1.595 sum 1.160 -3.429 -10.026 10.659 Atomic orbital electron populations 1.21739 0.94279 1.01268 1.01352 1.20716 0.93956 0.93131 0.86389 0.97361 1.22463 0.87443 0.98832 0.98571 1.64000 1.11371 1.45732 1.05084 1.22973 0.94808 0.97687 0.93408 1.22496 0.96552 1.02188 0.93534 1.22118 0.93848 1.01473 0.97792 1.23040 0.96388 0.93169 0.93576 0.95210 1.20465 0.83590 0.94761 0.93184 1.44610 1.06187 1.66715 1.16128 1.19548 0.92759 1.40443 0.86051 0.90787 1.25884 0.98417 1.01201 0.99440 1.70176 1.19398 1.50187 1.18844 0.85359 0.78220 0.78612 0.78362 1.20450 1.22120 1.20095 0.93304 0.93717 0.90389 0.89108 0.95767 0.89143 0.94272 0.89387 0.90332 0.90639 0.92046 0.98626 0.93055 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 7.92 71.98 0.57 -4.29 16 2 C 0.16 7.21 3.64 45.20 0.16 7.37 16 3 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 4 C 0.06 2.07 5.26 86.79 0.46 2.52 16 5 N -0.54 -19.84 4.84 -862.52 -4.17 -24.01 16 6 C 0.04 1.07 6.69 86.99 0.58 1.66 16 7 C -0.11 -2.76 7.05 31.99 0.23 -2.54 16 8 C -0.11 -3.69 6.64 31.37 0.21 -3.48 16 9 C 0.05 1.95 2.71 44.51 0.12 2.07 16 10 H 0.03 1.29 7.96 -2.39 -0.02 1.27 16 11 C 0.21 10.62 4.75 86.00 0.41 11.02 16 12 N -0.61 -32.31 3.05 -673.51 -2.06 -34.36 16 13 C -0.26 -14.45 8.62 84.03 0.72 -13.72 16 14 H 0.07 3.98 6.12 -2.91 -0.02 3.96 16 15 C -0.05 -3.13 5.00 84.86 0.42 -2.70 16 16 N -0.94 -57.25 11.09 21.65 0.24 -57.01 16 17 Si 0.97 45.81 29.57 68.60 2.03 47.84 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H 0.05 1.84 7.73 -2.39 -0.02 1.82 16 22 H 0.04 1.84 7.32 -2.39 -0.02 1.82 16 23 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 25 H 0.02 0.90 7.97 -2.38 -0.02 0.88 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.04 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 2.12 7.98 -2.39 -0.02 2.10 16 32 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.05 2.94 6.28 -2.38 -0.01 2.93 16 34 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -65.15 261.08 0.97 -64.18 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.05 Total: 5.44 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 3.88 Total: -2.08 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -5.99 Total: -115.38 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -65.15 0.97 -64.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252674541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.952 kcal (2) G-P(sol) polarization free energy of solvation -65.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds