Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00294 * 2 1 4 4 H 1.48498 * 109.47572 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47268 * 300.00261 * 3 2 1 6 6 H 1.48508 * 109.46956 * 60.00006 * 3 2 1 7 7 C 1.38814 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00379 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.48238 * 125.78010 * 359.97167 * 9 7 2 11 11 C 1.52326 * 105.86431 * 176.83752 * 10 9 7 12 12 H 1.09001 * 110.25049 * 272.18053 * 11 10 9 13 13 C 1.51445 * 117.45497 * 145.31491 * 11 10 9 14 14 C 1.53838 * 107.04567 * 181.23600 * 13 11 10 15 15 C 1.52526 * 111.60388 * 57.23415 * 14 13 11 16 16 C 1.53801 * 111.70998 * 305.84446 * 15 14 13 17 17 H 1.08998 * 109.99802 * 298.26601 * 16 15 14 18 18 N 1.46903 * 110.01123 * 177.03204 * 16 15 14 19 19 C 1.51608 * 106.96523 * 57.64579 * 16 15 14 20 20 H 1.09001 * 111.26141 * 55.59958 * 19 16 15 21 21 C 1.48656 * 125.78479 * 179.97438 * 9 7 2 22 22 H 0.96999 * 120.00172 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.17156 * 57.74326 * 10 9 7 24 24 H 1.08996 * 110.17858 * 295.93639 * 10 9 7 25 25 H 1.08999 * 109.93995 * 61.85075 * 13 11 10 26 26 H 1.09000 * 109.93690 * 300.62040 * 13 11 10 27 27 H 1.09002 * 109.04191 * 177.75937 * 14 13 11 28 28 H 1.09003 * 109.04257 * 296.70707 * 14 13 11 29 29 H 1.08994 * 109.03709 * 66.49364 * 15 14 13 30 30 H 1.09001 * 109.03093 * 185.34745 * 15 14 13 31 31 H 1.00900 * 111.00125 * 62.45246 * 18 16 15 32 32 H 1.00898 * 110.99622 * 186.40205 * 18 16 15 33 33 H 1.08998 * 110.62436 * 37.11298 * 21 9 7 34 34 H 1.09004 * 110.62829 * 274.09139 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1493 -2.5374 0.0006 11 6 -0.4163 -4.0349 -0.0803 12 1 -0.4498 -4.3565 -1.1212 13 6 -1.6223 -4.5703 0.6630 14 6 -1.6454 -6.0933 0.4472 15 6 -0.3503 -6.7470 0.9181 16 6 0.8834 -6.0992 0.2670 17 1 0.8441 -6.2267 -0.8148 18 7 2.1102 -6.7079 0.7986 19 6 0.8446 -4.6244 0.6158 20 1 0.7945 -4.4745 1.6943 21 6 1.9353 -3.7439 0.0005 22 1 -0.4850 0.8400 0.0004 23 1 -0.5783 -2.0320 -0.8646 24 1 -0.5684 -2.1301 0.9206 25 1 -2.5332 -4.1244 0.2636 26 1 -1.5331 -4.3468 1.7261 27 1 -2.4811 -6.5186 1.0030 28 1 -1.7827 -6.3000 -0.6142 29 1 -0.2753 -6.6479 2.0009 30 1 -0.3723 -7.8058 0.6601 31 1 2.1523 -7.6909 0.5751 32 1 2.9291 -6.2248 0.4607 33 1 2.8347 -3.7603 0.6161 34 1 2.1592 -4.0642 -1.0170 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252874055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -9.244837 kcal Electronic energy + Delta-G solvation = -14647.858781 eV Core-core repulsion = 12386.456447 eV Total energy + Delta-G solvation = -2261.402333 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85225 -36.93661 -34.61513 -33.93614 -30.88422 -29.76001 -27.64051 -26.70088 -23.15488 -21.97754 -21.08714 -20.79156 -18.83754 -16.97881 -16.37976 -16.04488 -15.84821 -15.56198 -15.26217 -14.85067 -14.17792 -13.88978 -13.45220 -13.26819 -12.81128 -12.78146 -12.57219 -12.47554 -12.21432 -11.88245 -11.80943 -11.59810 -11.40325 -10.92473 -10.84007 -10.71977 -9.53694 -8.92061 -7.85502 -5.21302 1.43678 1.45429 1.55796 2.47965 3.32111 3.45916 3.58937 3.70551 3.88873 4.09295 4.28697 4.34214 4.48474 4.52387 4.62133 4.71844 4.81605 4.84056 4.98488 5.02826 5.20247 5.27375 5.29723 5.33945 5.43235 5.45105 5.55987 5.72968 5.78396 6.15806 6.32166 6.71146 7.07085 7.73528 8.41693 9.25491 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.051401 B = 0.008925 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.601153 B = 3136.520713 C = 3590.343177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.082 0.918 9 N -0.634 5.634 10 C 0.198 3.802 11 C -0.107 4.107 12 H 0.066 0.934 13 C -0.100 4.100 14 C -0.107 4.107 15 C -0.104 4.104 16 C 0.113 3.887 17 H 0.039 0.961 18 N -0.849 5.849 19 C -0.081 4.081 20 H 0.060 0.940 21 C 0.138 3.862 22 H 0.246 0.754 23 H 0.010 0.990 24 H 0.001 0.999 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.350 0.650 32 H 0.344 0.656 33 H 0.041 0.959 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 -14.419 0.058 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.361 5.361 10 C 0.074 3.926 11 C -0.127 4.127 12 H 0.084 0.916 13 C -0.138 4.138 14 C -0.145 4.145 15 C -0.142 4.142 16 C 0.001 3.999 17 H 0.057 0.943 18 N -0.380 5.380 19 C -0.101 4.101 20 H 0.078 0.922 21 C 0.014 3.986 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.020 0.980 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.059 0.941 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -1.089 -14.023 0.770 14.086 hybrid contribution 0.580 1.318 -1.018 1.763 sum -0.510 -12.705 -0.248 12.718 Atomic orbital electron populations 1.70208 1.06338 1.25135 1.58491 1.25697 0.96703 1.01115 1.02828 0.84973 0.78152 0.79244 0.76750 1.18932 1.21781 1.21857 1.19543 0.91005 0.83893 1.42697 0.90061 1.45487 1.02370 1.01056 1.87211 1.20531 0.83478 0.91438 0.97175 1.21994 0.96396 0.95065 0.99206 0.91601 1.21282 0.96585 0.96580 0.99363 1.21493 0.97752 0.93228 1.02004 1.21500 0.92475 0.99631 1.00565 1.21040 0.91298 0.91534 0.96016 0.94324 1.58657 1.03961 1.07782 1.67620 1.21927 0.95078 0.94157 0.98943 0.92165 1.21461 0.95488 0.84784 0.96865 0.94458 0.97128 0.98030 0.91786 0.92844 0.89949 0.91505 0.92239 0.90155 0.83626 0.84289 0.94053 0.95970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 10.36 21.65 0.22 -59.38 16 2 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 3 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 7 C -0.24 -14.27 10.30 84.03 0.87 -13.41 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.63 -34.60 3.45 -693.05 -2.39 -36.99 16 10 C 0.20 10.37 5.07 85.82 0.43 10.81 16 11 C -0.11 -4.12 2.31 -10.62 -0.02 -4.14 16 12 H 0.07 2.46 7.92 -2.39 -0.02 2.44 16 13 C -0.10 -3.12 5.70 30.37 0.17 -2.95 16 14 C -0.11 -2.46 5.83 30.72 0.18 -2.28 16 15 C -0.10 -2.36 5.46 30.71 0.17 -2.20 16 16 C 0.11 3.02 3.03 44.73 0.14 3.15 16 17 H 0.04 1.03 7.98 -2.39 -0.02 1.01 16 18 N -0.85 -19.86 9.28 -169.45 -1.57 -21.44 16 19 C -0.08 -2.94 2.12 -10.32 -0.02 -2.96 16 20 H 0.06 2.42 8.03 -2.39 -0.02 2.40 16 21 C 0.14 5.94 6.33 85.99 0.54 6.48 16 22 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 23 H 0.01 0.62 7.30 -2.39 -0.02 0.60 16 24 H 0.00 0.09 7.60 -2.39 -0.02 0.07 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.35 6.18 9.07 -89.69 -0.81 5.37 16 32 H 0.34 8.10 8.47 -89.70 -0.76 7.34 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.17 263.17 0.71 -67.46 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -0.49 Total: 12.19 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 2.92 Total: -11.23 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -3.74 Total: -117.81 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -68.17 0.71 -67.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252874055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.213 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds