Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99849 * 2 1 4 4 H 1.48493 * 109.47500 * 269.99807 * 3 2 1 5 5 H 1.48500 * 109.47311 * 30.00001 * 3 2 1 6 6 H 1.48501 * 109.46895 * 149.99963 * 3 2 1 7 7 C 1.38815 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99674 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99868 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.53626 * 35.09555 * 10 9 7 12 12 C 1.53123 * 109.50361 * 274.99953 * 10 9 7 13 13 C 1.53120 * 109.21163 * 182.37202 * 12 10 9 14 14 C 1.53166 * 109.20873 * 57.62805 * 13 12 10 15 15 N 1.46845 * 109.55463 * 300.85535 * 14 13 12 16 16 C 1.46900 * 111.00045 * 185.84196 * 15 14 13 17 17 C 1.52996 * 117.50158 * 119.53889 * 16 15 14 18 18 C 1.52999 * 117.50175 * 50.87841 * 16 15 14 19 19 C 1.46848 * 111.19518 * 61.74755 * 15 14 13 20 20 H 0.97000 * 119.99900 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00278 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.52319 * 302.30995 * 12 10 9 23 23 H 1.08995 * 109.52318 * 62.43677 * 12 10 9 24 24 H 1.09004 * 109.49930 * 177.63007 * 13 12 10 25 25 H 1.08997 * 109.50353 * 297.74224 * 13 12 10 26 26 H 1.09003 * 109.44926 * 180.83262 * 14 13 12 27 27 H 1.09002 * 109.45193 * 60.88225 * 14 13 12 28 28 H 1.09005 * 115.54723 * 265.20661 * 16 15 14 29 29 H 1.09004 * 117.49955 * 0.02562 * 17 16 15 30 30 H 1.09005 * 117.50381 * 145.02056 * 17 16 15 31 31 H 1.09003 * 117.49876 * 214.98060 * 18 16 15 32 32 H 1.09002 * 117.49385 * 359.97438 * 18 16 15 33 33 H 1.09006 * 109.46097 * 178.23945 * 19 15 14 34 34 H 1.08996 * 109.46046 * 58.26729 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9677 -3.5525 0.5897 12 6 2.4237 -4.0360 -1.4394 13 6 3.1365 -5.3911 -1.4373 14 6 2.2254 -6.4388 -0.7905 15 7 1.9051 -6.0306 0.5833 16 6 1.1469 -7.0780 1.2804 17 6 1.7689 -7.6791 2.5424 18 6 1.7137 -8.4988 1.2509 19 6 1.1790 -4.7543 0.6023 20 1 -0.4850 0.8401 -0.0004 21 1 0.3556 -2.3880 -0.0023 22 1 1.5168 -4.1023 -2.0405 23 1 3.0844 -3.2776 -1.8593 24 1 3.3616 -5.6855 -2.4624 25 1 4.0631 -5.3141 -0.8685 26 1 2.7350 -7.4022 -0.7735 27 1 1.3048 -6.5252 -1.3676 28 1 0.0627 -6.9680 1.2570 29 1 2.7406 -7.2971 2.8557 30 1 1.0939 -7.9651 3.3492 31 1 1.0024 -9.3237 1.2084 32 1 2.6490 -8.6564 0.7137 33 1 0.9287 -4.4942 1.6309 34 1 0.2635 -4.8487 0.0185 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259124567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = 36.005756 kcal Electronic energy + Delta-G solvation = -14120.199453 eV Core-core repulsion = 11860.759333 eV Total energy + Delta-G solvation = -2259.440120 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.01729 -36.34594 -33.86272 -31.38223 -31.02119 -27.97659 -24.25579 -23.39301 -22.47658 -21.59265 -20.15240 -19.21973 -17.12488 -16.46234 -15.12855 -14.53782 -14.24934 -13.92421 -13.52581 -13.32245 -13.10873 -12.54456 -12.26845 -12.07249 -11.47672 -10.95790 -10.86775 -10.74379 -10.57246 -10.39431 -10.22648 -10.18619 -10.03104 -9.67044 -9.56968 -8.83836 -8.01348 -6.92652 -5.73515 -3.02086 3.46005 3.51031 3.52875 3.82581 3.97516 4.64382 4.96703 5.01930 5.19497 5.23866 5.39483 5.52072 5.62075 5.71777 5.73261 5.76002 5.84585 5.95540 5.98585 6.02697 6.21752 6.28592 6.29766 6.46587 6.56278 6.66599 7.00144 7.13441 7.38583 7.45369 7.74716 8.45424 9.56056 10.13924 10.48709 11.49468 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052082 B = 0.006935 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.482143 B = 4036.478347 C = 4291.890940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.055 0.945 12 C -0.137 4.137 13 C -0.116 4.116 14 C 0.059 3.941 15 N -0.509 5.509 16 C 0.010 3.990 17 C -0.165 4.165 18 C -0.182 4.182 19 C 0.057 3.943 20 H 0.254 0.746 21 H 0.382 0.618 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -15.068 0.549 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.068 4.068 15 N -0.233 5.233 16 C -0.099 4.099 17 C -0.202 4.202 18 C -0.220 4.220 19 C -0.071 4.071 20 H 0.064 0.936 21 H 0.216 0.784 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.868 -14.828 0.814 15.346 hybrid contribution -0.704 0.842 -0.512 1.211 sum 3.165 -13.986 0.302 14.343 Atomic orbital electron populations 1.69668 1.05126 1.25592 1.57998 1.24740 0.95512 0.97670 1.03168 0.86185 0.78672 0.83861 0.77479 1.21783 1.21818 1.20730 1.19247 0.91021 0.83989 1.42294 0.91115 1.42373 1.05751 0.99787 1.88617 1.20157 0.94516 0.85255 0.92826 0.92702 1.22313 0.99777 0.95063 1.00632 1.21617 0.98931 0.95671 0.99187 1.22102 0.98255 0.98273 0.88187 1.61685 1.44106 1.01863 1.15661 1.22429 0.95295 0.91212 1.00999 1.23058 1.03153 1.02953 0.91084 1.23077 1.03053 0.93564 1.02269 1.22387 0.95148 0.88344 1.01207 0.93569 0.78449 0.93057 0.91977 0.92349 0.91606 0.91390 0.95275 0.89389 0.88207 0.89086 0.89070 0.88484 0.90693 0.95194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.62 13.06 55.49 0.72 -27.90 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.61 9.93 -15.06 -0.15 -6.76 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -18.62 5.13 -53.35 -0.27 -18.90 16 10 C 0.18 3.82 2.93 -67.85 -0.20 3.62 16 11 H 0.05 1.21 8.08 -51.93 -0.42 0.79 16 12 C -0.14 -2.58 5.58 -26.61 -0.15 -2.73 16 13 C -0.12 -1.73 6.11 -26.58 -0.16 -1.90 16 14 C 0.06 0.84 5.29 -3.77 -0.02 0.82 16 15 N -0.51 -7.89 4.82 -226.61 -1.09 -8.98 16 16 C 0.01 0.13 5.42 -67.72 -0.37 -0.24 16 17 C -0.16 -1.90 10.46 -26.70 -0.28 -2.18 16 18 C -0.18 -1.95 9.69 -26.70 -0.26 -2.21 16 19 C 0.06 1.04 4.87 -3.83 -0.02 1.02 16 20 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 21 H 0.38 10.40 7.80 -40.82 -0.32 10.08 16 22 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.84 6.42 -51.93 -0.33 0.51 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.03 6.92 -51.93 -0.36 0.67 16 33 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 274.45 15.07 4.14 4.14 Total: -1.00 -29.78 274.45 -8.85 -38.62 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.62 Total: 6.45 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.70 Total: -11.09 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.64 Total: -55.78 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.78 -8.85 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259124567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.629 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds