Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99849 * 2 1 4 4 H 1.48493 * 109.47500 * 269.99807 * 3 2 1 5 5 H 1.48500 * 109.47311 * 30.00001 * 3 2 1 6 6 H 1.48501 * 109.46895 * 149.99963 * 3 2 1 7 7 C 1.38815 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99674 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99868 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.53626 * 35.09555 * 10 9 7 12 12 C 1.53123 * 109.50361 * 274.99953 * 10 9 7 13 13 C 1.53120 * 109.21163 * 182.37202 * 12 10 9 14 14 C 1.53166 * 109.20873 * 57.62805 * 13 12 10 15 15 N 1.46845 * 109.55463 * 300.85535 * 14 13 12 16 16 C 1.46900 * 111.00045 * 185.84196 * 15 14 13 17 17 C 1.52996 * 117.50158 * 119.53889 * 16 15 14 18 18 C 1.52999 * 117.50175 * 50.87841 * 16 15 14 19 19 C 1.46848 * 111.19518 * 61.74755 * 15 14 13 20 20 H 0.97000 * 119.99900 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00278 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.52319 * 302.30995 * 12 10 9 23 23 H 1.08995 * 109.52318 * 62.43677 * 12 10 9 24 24 H 1.09004 * 109.49930 * 177.63007 * 13 12 10 25 25 H 1.08997 * 109.50353 * 297.74224 * 13 12 10 26 26 H 1.09003 * 109.44926 * 180.83262 * 14 13 12 27 27 H 1.09002 * 109.45193 * 60.88225 * 14 13 12 28 28 H 1.09005 * 115.54723 * 265.20661 * 16 15 14 29 29 H 1.09004 * 117.49955 * 0.02562 * 17 16 15 30 30 H 1.09005 * 117.50381 * 145.02056 * 17 16 15 31 31 H 1.09003 * 117.49876 * 214.98060 * 18 16 15 32 32 H 1.09002 * 117.49385 * 359.97438 * 18 16 15 33 33 H 1.09006 * 109.46097 * 178.23945 * 19 15 14 34 34 H 1.08996 * 109.46046 * 58.26729 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9677 -3.5525 0.5897 12 6 2.4237 -4.0360 -1.4394 13 6 3.1365 -5.3911 -1.4373 14 6 2.2254 -6.4388 -0.7905 15 7 1.9051 -6.0306 0.5833 16 6 1.1469 -7.0780 1.2804 17 6 1.7689 -7.6791 2.5424 18 6 1.7137 -8.4988 1.2509 19 6 1.1790 -4.7543 0.6023 20 1 -0.4850 0.8401 -0.0004 21 1 0.3556 -2.3880 -0.0023 22 1 1.5168 -4.1023 -2.0405 23 1 3.0844 -3.2776 -1.8593 24 1 3.3616 -5.6855 -2.4624 25 1 4.0631 -5.3141 -0.8685 26 1 2.7350 -7.4022 -0.7735 27 1 1.3048 -6.5252 -1.3676 28 1 0.0627 -6.9680 1.2570 29 1 2.7406 -7.2971 2.8557 30 1 1.0939 -7.9651 3.3492 31 1 1.0024 -9.3237 1.2084 32 1 2.6490 -8.6564 0.7137 33 1 0.9287 -4.4942 1.6309 34 1 0.2635 -4.8487 0.0185 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259124567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = 16.353434 kcal Electronic energy + Delta-G solvation = -14121.051642 eV Core-core repulsion = 11860.759333 eV Total energy + Delta-G solvation = -2260.292309 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28732 -37.65808 -35.62389 -33.16059 -32.45665 -29.75151 -25.96243 -24.99681 -23.66430 -22.75001 -21.37968 -20.70446 -19.18393 -17.64278 -16.66462 -16.21381 -15.55089 -15.40613 -15.04661 -15.03580 -14.56060 -14.11272 -13.64573 -13.28648 -12.93181 -12.84714 -12.36786 -12.27852 -12.07677 -12.00886 -11.80274 -11.68786 -11.40150 -11.10785 -11.04987 -10.85542 -9.22738 -9.03001 -7.95354 -5.24554 1.46793 1.48752 1.57350 2.52684 2.79691 2.93577 3.37899 3.88152 4.00122 4.01956 4.06456 4.15752 4.26249 4.33644 4.43842 4.49671 4.62913 4.69193 4.81802 4.88349 4.93051 5.04159 5.12683 5.13528 5.17563 5.36013 5.43335 5.49400 5.57919 6.09986 6.24236 6.28524 7.32243 8.06640 8.31135 9.28498 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052082 B = 0.006935 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.482143 B = 4036.478347 C = 4291.890940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.737 5.737 10 C 0.179 3.821 11 H 0.041 0.959 12 C -0.130 4.130 13 C -0.107 4.107 14 C 0.059 3.941 15 N -0.513 5.513 16 C -0.019 4.019 17 C -0.164 4.164 18 C -0.157 4.157 19 C 0.073 3.927 20 H 0.251 0.749 21 H 0.371 0.629 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.028 0.972 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -16.761 0.404 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.377 5.377 10 C 0.071 3.929 11 H 0.059 0.941 12 C -0.170 4.170 13 C -0.145 4.145 14 C -0.068 4.068 15 N -0.237 5.237 16 C -0.127 4.127 17 C -0.201 4.201 18 C -0.194 4.194 19 C -0.056 4.056 20 H 0.060 0.940 21 H 0.202 0.798 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.059 -16.571 0.668 17.339 hybrid contribution -1.043 1.278 -0.448 1.709 sum 4.017 -15.293 0.220 15.813 Atomic orbital electron populations 1.69826 1.06660 1.26070 1.59722 1.25570 0.96394 1.01094 1.03777 0.85125 0.77708 0.79403 0.77461 1.21349 1.22112 1.19428 1.19598 0.91356 0.85122 1.40911 0.90800 1.42558 1.05363 1.00993 1.88811 1.20317 0.93947 0.84400 0.94265 0.94060 1.22139 0.99398 0.97121 0.98330 1.21575 0.98530 0.93375 1.01042 1.22183 0.98239 0.99064 0.87302 1.61660 1.43967 1.01376 1.16734 1.22518 0.95191 0.92329 1.02692 1.23120 1.02818 1.02705 0.91501 1.23173 1.03278 0.92252 1.00745 1.22050 0.94443 0.89300 0.99834 0.94009 0.79774 0.94006 0.93745 0.89745 0.91436 0.88566 0.95416 0.89690 0.89055 0.87599 0.86924 0.87897 0.92058 0.95896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 47.03 29.55 68.60 2.03 49.05 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -13.64 9.93 84.03 0.83 -12.81 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -38.92 5.13 -322.70 -1.65 -40.58 16 10 C 0.18 7.60 2.93 45.04 0.13 7.73 16 11 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 12 C -0.13 -4.84 5.58 30.68 0.17 -4.67 16 13 C -0.11 -2.98 6.11 30.69 0.19 -2.79 16 14 C 0.06 1.53 5.29 86.37 0.46 1.99 16 15 N -0.51 -15.21 4.82 -870.85 -4.19 -19.41 16 16 C -0.02 -0.46 5.42 44.91 0.24 -0.21 16 17 C -0.16 -3.40 10.46 30.62 0.32 -3.08 16 18 C -0.16 -2.82 9.69 30.62 0.30 -2.53 16 19 C 0.07 2.66 4.87 86.33 0.42 3.08 16 20 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.37 20.93 7.80 -92.71 -0.72 20.20 16 22 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.10 2.00 6.42 -2.39 -0.02 1.99 16 27 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 2.15 8.04 -2.38 -0.02 2.13 16 29 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.76 6.92 -2.39 -0.02 1.74 16 33 H 0.06 2.38 8.12 -2.38 -0.02 2.36 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -64.13 274.45 0.33 -63.80 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.34 Total: 24.90 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 3.53 Total: -17.30 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.56 Total: -120.45 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -64.13 0.33 -63.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259124567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.149 kcal (2) G-P(sol) polarization free energy of solvation -64.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds