Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48502 * 109.47427 * 270.00393 * 3 2 1 5 5 H 1.48504 * 109.47139 * 30.00333 * 3 2 1 6 6 H 1.48506 * 109.46934 * 150.00166 * 3 2 1 7 7 C 1.38815 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99814 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00126 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99883 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.50789 * 324.92607 * 10 9 7 12 12 C 1.53126 * 109.50044 * 85.00203 * 10 9 7 13 13 C 1.53124 * 109.15878 * 177.63196 * 12 10 9 14 14 C 1.53035 * 109.27794 * 302.34791 * 13 12 10 15 15 N 1.46844 * 109.52494 * 59.18054 * 14 13 12 16 16 C 1.46897 * 111.00090 * 174.16001 * 15 14 13 17 17 C 1.52998 * 117.50152 * 12.95325 * 16 15 14 18 18 C 1.52999 * 117.49966 * 304.29585 * 16 15 14 19 19 C 1.46854 * 111.19703 * 298.25280 * 15 14 13 20 20 H 0.97000 * 120.00275 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99836 * 359.97438 * 9 7 2 22 22 H 1.08998 * 109.52297 * 297.54144 * 12 10 9 23 23 H 1.08999 * 109.51925 * 57.73347 * 12 10 9 24 24 H 1.08999 * 109.50059 * 62.28737 * 13 12 10 25 25 H 1.08993 * 109.49981 * 182.40384 * 13 12 10 26 26 H 1.09002 * 109.46466 * 299.16376 * 14 13 12 27 27 H 1.09002 * 109.46192 * 179.19659 * 14 13 12 28 28 H 1.09001 * 115.55205 * 158.62225 * 16 15 14 29 29 H 1.09002 * 117.49427 * 0.02562 * 17 16 15 30 30 H 1.09003 * 117.50507 * 145.01467 * 17 16 15 31 31 H 1.09002 * 117.49919 * 214.98138 * 18 16 15 32 32 H 1.09000 * 117.49649 * 359.97438 * 18 16 15 33 33 H 1.08994 * 109.46310 * 301.73015 * 19 15 14 34 34 H 1.09004 * 109.45830 * 181.75702 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5663 -3.2063 0.5897 12 6 4.2583 -2.9767 -1.4390 13 6 5.0756 -4.2715 -1.4355 14 6 6.4373 -4.0078 -0.7890 15 7 6.2435 -3.5267 0.5848 16 6 7.5292 -3.3947 1.2828 17 6 8.8024 -3.4626 0.4371 18 6 8.4266 -4.6321 1.3504 19 6 5.5019 -2.2592 0.6038 20 1 -0.4850 0.8400 0.0004 21 1 3.8646 -0.3620 -0.0014 22 1 3.2713 -3.1699 -1.8592 23 1 4.7701 -2.2246 -2.0394 24 1 4.5447 -5.0353 -0.8672 25 1 5.2194 -4.6137 -2.4603 26 1 6.9733 -3.2539 -1.3656 27 1 7.0163 -4.9312 -0.7720 28 1 7.5311 -2.7242 2.1421 29 1 8.6859 -3.6047 -0.6373 30 1 9.6420 -2.8370 0.7402 31 1 9.0191 -4.7754 2.2540 32 1 8.0627 -5.5441 0.8772 33 1 6.0422 -1.5136 0.0206 34 1 5.4014 -1.9127 1.6324 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259124568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = 43.115699 kcal Electronic energy + Delta-G solvation = -14226.641446 eV Core-core repulsion = 11967.509636 eV Total energy + Delta-G solvation = -2259.131810 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.44627 -36.48079 -33.85631 -31.41327 -31.27142 -28.44823 -24.49933 -23.22806 -22.49661 -22.00395 -20.03569 -19.24124 -17.54512 -16.61803 -15.33543 -14.69088 -14.27980 -13.96560 -13.69794 -13.38620 -13.10672 -12.54202 -12.49424 -12.05457 -11.62658 -11.23864 -11.02032 -10.90072 -10.81081 -10.57680 -10.35201 -10.30977 -10.07606 -9.74430 -9.55973 -8.88139 -7.99646 -7.25343 -5.74933 -3.10491 3.38207 3.41186 3.45918 3.66624 4.05551 4.60604 4.78758 4.89637 4.96405 5.07122 5.28916 5.43938 5.50671 5.55967 5.61508 5.63614 5.72146 5.75908 5.89623 5.92896 6.04154 6.11412 6.16780 6.27562 6.47845 6.53234 6.90361 7.01354 7.24099 7.30367 8.02464 8.44263 9.22548 9.95118 10.14882 11.43492 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048104 B = 0.007711 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.938076 B = 3630.159499 C = 3932.697755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.186 3.814 11 H 0.064 0.936 12 C -0.137 4.137 13 C -0.116 4.116 14 C 0.054 3.946 15 N -0.502 5.502 16 C 0.027 3.973 17 C -0.225 4.225 18 C -0.173 4.173 19 C 0.052 3.948 20 H 0.259 0.741 21 H 0.359 0.641 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.538 -7.332 -0.112 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.391 5.391 10 C 0.077 3.923 11 H 0.082 0.918 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.074 4.074 15 N -0.224 5.224 16 C -0.082 4.082 17 C -0.264 4.264 18 C -0.211 4.211 19 C -0.076 4.076 20 H 0.069 0.931 21 H 0.192 0.808 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.957 -7.726 0.152 17.730 hybrid contribution 1.105 1.858 -0.486 2.216 sum 17.062 -5.868 -0.334 18.046 Atomic orbital electron populations 1.69696 1.05073 1.25763 1.57711 1.24660 0.95217 0.97127 1.02162 0.86559 0.79203 0.85107 0.77713 1.21179 1.21743 1.20393 1.19076 0.80425 0.94746 1.42718 0.89094 1.42736 1.04062 1.01927 1.90345 1.20143 0.89717 0.89172 0.93296 0.91760 1.22278 0.99917 0.95427 1.00147 1.21596 0.95216 0.99224 0.99414 1.22207 0.97780 0.99132 0.88262 1.61734 1.15702 1.29252 1.15747 1.22676 0.85154 1.00760 0.99659 1.23552 1.00786 1.03386 0.98725 1.23044 1.02963 0.93435 1.01659 1.22429 0.95121 0.88747 1.01291 0.93089 0.80837 0.91382 0.93142 0.91298 0.92139 0.94794 0.91256 0.86456 0.88430 0.89126 0.88710 0.88638 0.95167 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.28 27.73 -169.99 -4.71 17.57 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.81 10.41 -15.06 -0.16 -6.96 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 9 N -0.75 -17.93 4.93 -53.34 -0.26 -18.19 16 10 C 0.19 3.70 2.93 -67.85 -0.20 3.50 16 11 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 12 C -0.14 -2.46 5.58 -26.60 -0.15 -2.60 16 13 C -0.12 -1.66 6.09 -26.65 -0.16 -1.83 16 14 C 0.05 0.72 4.12 -3.84 -0.02 0.70 16 15 N -0.50 -7.35 4.88 -226.69 -1.11 -8.45 16 16 C 0.03 0.34 6.10 -67.72 -0.41 -0.08 16 17 C -0.23 -2.39 9.58 -26.70 -0.26 -2.64 16 18 C -0.17 -1.79 9.94 -26.70 -0.27 -2.06 16 19 C 0.05 0.88 4.91 -3.83 -0.02 0.86 16 20 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 21 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.46 7.12 -51.93 -0.37 0.09 16 27 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 28 H 0.12 1.39 8.04 -51.93 -0.42 0.98 16 29 H 0.10 1.05 5.97 -51.93 -0.31 0.74 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.00 7.23 -51.93 -0.38 0.62 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -30.44 267.38 -8.44 -38.87 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.43 Total: 6.03 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.73 Total: -11.09 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.59 Total: -55.41 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.44 -8.44 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259124568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.987 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds