Wall clock time and date at job start Mon Mar 30 2020 03:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.82949 * 2 1 4 4 C 1.53710 * 109.84277 * 239.08829 * 2 1 3 5 5 H 1.08995 * 109.18216 * 176.03343 * 4 2 1 6 6 C 1.50709 * 109.17278 * 56.80668 * 4 2 1 7 7 H 1.07996 * 119.99999 * 359.97438 * 6 4 2 8 8 C 1.37880 * 119.99483 * 179.97438 * 6 4 2 9 9 N 1.31517 * 119.99489 * 179.97438 * 8 6 4 10 10 Si 1.86801 * 120.00397 * 0.02562 * 8 6 4 11 11 H 1.48498 * 109.47302 * 89.99524 * 10 8 6 12 12 H 1.48494 * 109.47057 * 209.99870 * 10 8 6 13 13 H 1.48502 * 109.46767 * 329.99646 * 10 8 6 14 14 N 1.46595 * 110.97289 * 296.42414 * 4 2 1 15 15 C 1.47555 * 112.69717 * 305.20083 * 14 4 2 16 16 C 1.52300 * 107.43734 * 57.71678 * 15 14 4 17 17 H 1.08993 * 110.91366 * 59.56030 * 16 15 14 18 18 C 1.53820 * 113.74947 * 185.49693 * 16 15 14 19 19 C 1.55400 * 101.98778 * 155.21855 * 18 16 15 20 20 C 1.54887 * 104.96953 * 337.72560 * 19 18 16 21 21 N 1.45477 * 109.84048 * 120.90001 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00526 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00507 * 1 2 3 25 25 H 0.97004 * 119.99642 * 180.02562 * 9 8 6 26 26 H 1.00901 * 111.00351 * 179.97438 * 14 4 2 27 27 H 1.09003 * 109.86471 * 177.19850 * 15 14 4 28 28 H 1.09001 * 109.86576 * 298.16662 * 15 14 4 29 29 H 1.09006 * 110.93011 * 273.39397 * 18 16 15 30 30 H 1.09004 * 110.92940 * 37.00773 * 18 16 15 31 31 H 1.08998 * 110.34331 * 96.60140 * 19 18 16 32 32 H 1.09009 * 110.33917 * 218.85368 * 19 18 16 33 33 H 1.08993 * 110.17465 * 115.14399 * 20 19 18 34 34 H 1.08996 * 110.17628 * 236.87966 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0517 -0.7428 -1.2405 5 1 3.1393 -0.6756 -1.2670 6 6 1.4867 -0.0958 -2.4788 7 1 0.8259 0.7538 -2.3906 8 6 1.8135 -0.5887 -3.7243 9 7 1.3200 -0.0245 -4.8050 10 14 2.9559 -2.0588 -3.8769 11 1 2.1566 -3.3102 -3.8653 12 1 3.7133 -1.9669 -5.1508 13 1 3.9061 -2.0677 -2.7356 14 7 1.6569 -2.1542 -1.2116 15 6 2.0742 -2.8369 0.0281 16 6 1.4567 -2.0796 1.1963 17 1 0.3694 -2.0684 1.1215 18 6 1.9087 -2.5913 2.5747 19 6 1.7015 -1.3370 3.4684 20 6 1.7233 -0.1387 2.4874 21 7 2.0237 -0.7027 1.1742 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 0.5139 0.8900 25 1 1.5496 -0.3715 -5.6812 26 1 1.9988 -2.6421 -2.0259 27 1 1.7154 -3.8662 0.0229 28 1 3.1610 -2.8241 0.1102 29 1 1.2795 -3.4161 2.9094 30 1 2.9576 -2.8873 2.5553 31 1 0.7404 -1.3906 3.9798 32 1 2.5122 -1.2492 4.1919 33 1 0.7503 0.3522 2.4719 34 1 2.4975 0.5713 2.7783 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259607446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:46 Heat of formation + Delta-G solvation = 23.189845 kcal Electronic energy + Delta-G solvation = -15025.840808 eV Core-core repulsion = 12765.844948 eV Total energy + Delta-G solvation = -2259.995860 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.71709 -35.49648 -32.75295 -32.25626 -29.40932 -28.37491 -26.43335 -24.00055 -22.67067 -20.78888 -20.55847 -18.05774 -16.72502 -15.90785 -15.49204 -14.69328 -14.24268 -13.85344 -13.43087 -13.14761 -13.10187 -12.39189 -12.28671 -11.88937 -11.29942 -11.26404 -10.96477 -10.92603 -10.91854 -10.47801 -10.22797 -10.09536 -9.83880 -9.31135 -9.18353 -8.62963 -7.74074 -7.28398 -6.10324 -4.09700 3.22323 3.28680 3.32860 4.34482 4.48599 4.80212 4.95999 5.08318 5.19143 5.44145 5.64385 5.73234 5.79844 5.89108 5.92980 5.99983 6.07531 6.12447 6.20423 6.24157 6.29779 6.37056 6.50074 6.70232 6.80094 7.09068 7.15621 7.43771 7.60161 7.90393 8.22034 8.32818 8.53564 8.93911 9.51519 11.02563 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048505 B = 0.011363 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.120969 B = 2463.629315 C = 2823.760550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 H 0.074 0.926 4 C 0.197 3.803 5 H 0.002 0.998 6 C -0.498 4.498 7 H 0.082 0.918 8 C 0.075 3.925 9 N -0.896 5.896 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.292 1.292 13 H -0.270 1.270 14 N -0.688 5.688 15 C 0.065 3.935 16 C 0.067 3.933 17 H 0.067 0.933 18 C -0.116 4.116 19 C -0.125 4.125 20 C 0.048 3.952 21 N -0.541 5.541 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.321 0.679 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -4.281 13.139 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.003 4.003 3 H 0.092 0.908 4 C 0.089 3.911 5 H 0.019 0.981 6 C -0.537 4.537 7 H 0.100 0.900 8 C -0.127 4.127 9 N -0.534 5.534 10 Si 0.705 3.295 11 H -0.199 1.199 12 H -0.219 1.219 13 H -0.196 1.196 14 N -0.327 5.327 15 C -0.065 4.065 16 C -0.041 4.041 17 H 0.085 0.915 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.080 4.080 21 N -0.265 5.265 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.884 -4.081 13.098 13.748 hybrid contribution 0.645 -0.810 -0.348 1.093 sum 1.529 -4.891 12.750 13.741 Atomic orbital electron populations 1.22234 0.97381 1.02263 1.00462 1.21473 0.93244 0.97043 0.88491 0.90767 1.19557 0.93919 0.84161 0.93427 0.98055 1.21036 1.29628 1.14968 0.88085 0.90018 1.24971 0.95535 0.96294 0.95920 1.69877 1.44502 1.41136 0.97913 0.87010 0.81384 0.83887 0.77262 1.19923 1.21930 1.19594 1.60813 1.65515 1.04550 1.01834 1.21837 0.97065 0.96516 0.91105 1.22598 0.98162 0.89742 0.93645 0.91493 1.22344 1.01575 0.96706 0.94821 1.22622 1.01200 0.94841 0.97625 1.22399 0.99419 0.96633 0.89517 1.63022 1.58596 1.03310 1.01600 0.91804 0.90829 0.95469 0.92568 0.85584 0.91991 0.95393 0.91595 0.91072 0.91957 0.91554 0.94468 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.19 37.16 0.30 -3.01 16 2 C 0.11 2.23 2.81 -68.11 -0.19 2.04 16 3 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 4 C 0.20 4.80 1.84 -68.66 -0.13 4.67 16 5 H 0.00 0.05 7.24 -51.93 -0.38 -0.32 16 6 C -0.50 -13.91 8.63 -34.43 -0.30 -14.21 16 7 H 0.08 2.43 6.73 -52.49 -0.35 2.08 16 8 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 9 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 10 Si 0.87 21.65 24.56 -169.99 -4.18 17.47 16 11 H -0.27 -6.51 6.98 56.52 0.39 -6.12 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.27 -6.58 6.56 56.52 0.37 -6.21 16 14 N -0.69 -15.82 5.89 -107.67 -0.63 -16.45 16 15 C 0.06 1.23 6.37 -3.82 -0.02 1.20 16 16 C 0.07 1.15 2.38 -66.52 -0.16 0.99 16 17 H 0.07 1.21 5.88 -51.93 -0.31 0.90 16 18 C -0.12 -1.57 6.63 -25.03 -0.17 -1.73 16 19 C -0.12 -1.56 6.99 -24.46 -0.17 -1.73 16 20 C 0.05 0.73 6.72 -3.29 -0.02 0.71 16 21 N -0.54 -9.98 4.61 -217.16 -1.00 -10.98 16 22 H 0.06 1.31 5.71 -51.93 -0.30 1.02 16 23 H 0.07 1.62 6.48 -51.93 -0.34 1.28 16 24 H 0.03 0.47 6.72 -51.93 -0.35 0.12 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.32 7.62 3.78 -39.29 -0.15 7.47 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.04 0.56 6.50 -51.93 -0.34 0.22 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 248.15 15.07 3.74 3.74 Total: -1.00 -29.55 248.15 -7.30 -36.85 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.06 Total: 4.75 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.95 Total: -8.99 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.86 Total: -53.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.18 Total: 17.47 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.55 -7.30 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259607446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.042 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds