Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.82949 * 2 1 4 4 C 1.53710 * 109.84277 * 239.08829 * 2 1 3 5 5 H 1.08995 * 109.18216 * 176.03343 * 4 2 1 6 6 C 1.50709 * 109.17278 * 56.80668 * 4 2 1 7 7 H 1.07996 * 119.99999 * 359.97438 * 6 4 2 8 8 C 1.37880 * 119.99483 * 179.97438 * 6 4 2 9 9 N 1.31517 * 119.99489 * 179.97438 * 8 6 4 10 10 Si 1.86801 * 120.00397 * 0.02562 * 8 6 4 11 11 H 1.48498 * 109.47302 * 89.99524 * 10 8 6 12 12 H 1.48494 * 109.47057 * 209.99870 * 10 8 6 13 13 H 1.48502 * 109.46767 * 329.99646 * 10 8 6 14 14 N 1.46595 * 110.97289 * 296.42414 * 4 2 1 15 15 C 1.47555 * 112.69717 * 305.20083 * 14 4 2 16 16 C 1.52300 * 107.43734 * 57.71678 * 15 14 4 17 17 H 1.08993 * 110.91366 * 59.56030 * 16 15 14 18 18 C 1.53820 * 113.74947 * 185.49693 * 16 15 14 19 19 C 1.55400 * 101.98778 * 155.21855 * 18 16 15 20 20 C 1.54887 * 104.96953 * 337.72560 * 19 18 16 21 21 N 1.45477 * 109.84048 * 120.90001 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00526 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00507 * 1 2 3 25 25 H 0.97004 * 119.99642 * 180.02562 * 9 8 6 26 26 H 1.00901 * 111.00351 * 179.97438 * 14 4 2 27 27 H 1.09003 * 109.86471 * 177.19850 * 15 14 4 28 28 H 1.09001 * 109.86576 * 298.16662 * 15 14 4 29 29 H 1.09006 * 110.93011 * 273.39397 * 18 16 15 30 30 H 1.09004 * 110.92940 * 37.00773 * 18 16 15 31 31 H 1.08998 * 110.34331 * 96.60140 * 19 18 16 32 32 H 1.09009 * 110.33917 * 218.85368 * 19 18 16 33 33 H 1.08993 * 110.17465 * 115.14399 * 20 19 18 34 34 H 1.08996 * 110.17628 * 236.87966 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0517 -0.7428 -1.2405 5 1 3.1393 -0.6756 -1.2670 6 6 1.4867 -0.0958 -2.4788 7 1 0.8259 0.7538 -2.3906 8 6 1.8135 -0.5887 -3.7243 9 7 1.3200 -0.0245 -4.8050 10 14 2.9559 -2.0588 -3.8769 11 1 2.1566 -3.3102 -3.8653 12 1 3.7133 -1.9669 -5.1508 13 1 3.9061 -2.0677 -2.7356 14 7 1.6569 -2.1542 -1.2116 15 6 2.0742 -2.8369 0.0281 16 6 1.4567 -2.0796 1.1963 17 1 0.3694 -2.0684 1.1215 18 6 1.9087 -2.5913 2.5747 19 6 1.7015 -1.3370 3.4684 20 6 1.7233 -0.1387 2.4874 21 7 2.0237 -0.7027 1.1742 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 0.5139 0.8900 25 1 1.5496 -0.3715 -5.6812 26 1 1.9988 -2.6421 -2.0259 27 1 1.7154 -3.8662 0.0229 28 1 3.1610 -2.8241 0.1102 29 1 1.2795 -3.4161 2.9094 30 1 2.9576 -2.8873 2.5553 31 1 0.7404 -1.3906 3.9798 32 1 2.5122 -1.2492 4.1919 33 1 0.7503 0.3522 2.4719 34 1 2.4975 0.5713 2.7783 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259607446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = 0.593212 kcal Electronic energy + Delta-G solvation = -15026.820672 eV Core-core repulsion = 12765.844948 eV Total energy + Delta-G solvation = -2260.975724 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.17402 -37.10213 -34.44058 -34.18570 -30.94778 -29.78601 -28.15665 -25.78447 -24.21811 -22.41796 -21.71741 -19.63186 -18.79878 -17.68626 -16.89578 -16.13926 -15.74598 -15.57847 -15.22065 -14.91048 -14.61751 -14.14519 -13.75880 -13.24806 -12.93051 -12.77211 -12.70360 -12.50251 -12.16835 -11.89213 -11.82535 -11.71646 -11.34007 -11.16501 -11.05786 -10.80624 -9.26125 -9.01363 -8.32181 -6.36338 1.22854 1.28741 1.35399 2.25408 2.92031 3.12146 3.50988 3.76047 3.89888 4.11537 4.17855 4.37564 4.40607 4.44697 4.54755 4.66076 4.71701 4.77367 4.94677 4.99222 5.03284 5.05162 5.09971 5.15504 5.29510 5.37410 5.51379 5.55703 6.06020 6.27760 6.37392 6.43740 6.53191 6.75896 7.29069 8.83977 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048505 B = 0.011363 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.120969 B = 2463.629315 C = 2823.760550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 H 0.062 0.938 4 C 0.203 3.797 5 H -0.020 1.020 6 C -0.503 4.503 7 H 0.047 0.953 8 C 0.019 3.981 9 N -0.942 5.942 10 Si 0.939 3.061 11 H -0.255 1.255 12 H -0.291 1.291 13 H -0.265 1.265 14 N -0.698 5.698 15 C 0.061 3.939 16 C 0.063 3.937 17 H 0.061 0.939 18 C -0.107 4.107 19 C -0.116 4.116 20 C 0.042 3.958 21 N -0.552 5.552 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.267 0.733 26 H 0.314 0.686 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -6.162 15.704 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.001 3.999 3 H 0.081 0.919 4 C 0.095 3.905 5 H -0.003 1.003 6 C -0.543 4.543 7 H 0.066 0.934 8 C -0.179 4.179 9 N -0.582 5.582 10 Si 0.766 3.234 11 H -0.180 1.180 12 H -0.218 1.218 13 H -0.190 1.190 14 N -0.336 5.336 15 C -0.068 4.068 16 C -0.045 4.045 17 H 0.078 0.922 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.085 4.085 21 N -0.277 5.277 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.136 0.864 27 H 0.107 0.893 28 H 0.043 0.957 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.350 -5.969 15.700 16.851 hybrid contribution 0.469 -0.156 -1.102 1.208 sum 1.819 -6.125 14.598 15.935 Atomic orbital electron populations 1.22066 0.96750 1.01875 1.00261 1.21210 0.93588 0.96258 0.88872 0.91934 1.19332 0.92268 0.85466 0.93431 1.00258 1.21260 1.28675 1.14286 0.90030 0.93441 1.25782 0.97250 0.99376 0.95513 1.70021 1.46477 1.43165 0.98538 0.85954 0.79434 0.80812 0.77165 1.18028 1.21763 1.19036 1.60664 1.65763 1.03796 1.03378 1.22044 0.97140 0.97844 0.89771 1.22693 0.97632 0.88979 0.95158 0.92152 1.22337 1.02141 0.97863 0.92208 1.22618 1.03119 0.92593 0.97012 1.22562 0.99608 0.98078 0.88262 1.62976 1.58773 1.03949 1.02013 0.92167 0.93817 0.92791 0.92424 0.86388 0.89283 0.95706 0.89029 0.90856 0.90085 0.89601 0.94453 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 8.19 71.98 0.59 -5.46 16 2 C 0.11 4.64 2.81 45.42 0.13 4.76 16 3 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 4 C 0.20 10.00 1.84 44.47 0.08 10.08 16 5 H -0.02 -1.06 7.24 -2.39 -0.02 -1.07 16 6 C -0.50 -29.15 8.63 25.60 0.22 -28.93 16 7 H 0.05 2.99 6.73 -2.91 -0.02 2.98 16 8 C 0.02 1.13 5.47 84.66 0.46 1.59 16 9 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 10 Si 0.94 45.22 24.56 68.60 1.69 46.91 16 11 H -0.25 -11.46 6.98 99.48 0.69 -10.76 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.27 -12.40 6.56 99.48 0.65 -11.75 16 14 N -0.70 -31.38 5.89 -494.54 -2.91 -34.30 16 15 C 0.06 2.17 6.37 85.95 0.55 2.72 16 16 C 0.06 1.99 2.38 44.57 0.11 2.10 16 17 H 0.06 2.01 5.88 -2.39 -0.01 1.99 16 18 C -0.11 -2.41 6.63 31.70 0.21 -2.20 16 19 C -0.12 -2.34 6.99 32.06 0.22 -2.12 16 20 C 0.04 1.15 6.72 87.11 0.59 1.74 16 21 N -0.55 -19.34 4.61 -840.96 -3.87 -23.21 16 22 H 0.06 2.44 5.71 -2.39 -0.01 2.42 16 23 H 0.04 1.98 6.48 -2.39 -0.02 1.97 16 24 H 0.05 1.83 6.72 -2.38 -0.02 1.82 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.31 14.47 3.78 -89.69 -0.34 14.13 16 27 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.65 8.11 -2.38 -0.02 1.63 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.04 1.01 6.50 -2.39 -0.02 1.00 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -65.32 248.15 -0.97 -66.29 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.68 Total: 18.70 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.16 Total: -15.72 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -6.49 Total: -116.17 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.69 Total: 46.91 kcal Total: -65.32 -0.97 -66.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259607446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.880 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds