Wall clock time and date at job start Mon Mar 30 2020 03:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.84230 * 2 1 4 4 C 1.53705 * 109.84903 * 239.00168 * 2 1 3 5 5 H 1.08998 * 109.16050 * 304.67336 * 4 2 1 6 6 C 1.50695 * 109.16717 * 63.87213 * 4 2 1 7 7 H 1.08007 * 119.99935 * 359.97438 * 6 4 2 8 8 C 1.37869 * 120.00321 * 180.02562 * 6 4 2 9 9 N 1.31513 * 119.99840 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 120.00399 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47554 * 59.99666 * 10 8 6 12 12 H 1.48502 * 109.47269 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46806 * 299.99595 * 10 8 6 14 14 N 1.46593 * 111.03510 * 184.27311 * 4 2 1 15 15 C 1.47594 * 112.69280 * 54.66101 * 14 4 2 16 16 C 1.52151 * 107.41984 * 302.61113 * 15 14 4 17 17 H 1.09007 * 110.22154 * 302.50229 * 16 15 14 18 18 C 1.53128 * 114.44209 * 176.90170 * 16 15 14 19 19 C 1.55065 * 104.08854 * 215.17938 * 18 16 15 20 20 C 1.55281 * 104.91031 * 2.79447 * 19 18 16 21 21 N 1.45635 * 109.85268 * 120.93351 * 2 1 3 22 22 H 1.09002 * 109.47153 * 299.06475 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.06666 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.06648 * 1 2 3 25 25 H 0.97000 * 120.00368 * 180.02562 * 9 8 6 26 26 H 1.00896 * 110.99974 * 179.87172 * 14 4 2 27 27 H 1.09003 * 109.86882 * 183.12751 * 15 14 4 28 28 H 1.08998 * 109.92359 * 62.12221 * 15 14 4 29 29 H 1.08997 * 110.50845 * 333.82949 * 18 16 15 30 30 H 1.09000 * 110.50843 * 96.53186 * 18 16 15 31 31 H 1.08995 * 110.35520 * 121.65816 * 19 18 16 32 32 H 1.08999 * 110.35330 * 243.83540 * 19 18 16 33 33 H 1.08994 * 110.63531 * 265.59346 * 20 19 18 34 34 H 1.09003 * 110.63486 * 142.55194 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9000 1.0253 0.0000 4 6 2.0519 -0.7446 -1.2393 5 1 1.6224 -1.7461 -1.2621 6 6 1.6303 0.0016 -2.4788 7 1 1.0516 0.9094 -2.3920 8 6 1.9822 -0.4751 -3.7236 9 7 2.6864 -1.5808 -3.8293 10 14 1.4602 0.4501 -5.2601 11 1 2.0269 1.8223 -5.2281 12 1 1.9600 -0.2645 -6.4621 13 1 -0.0218 0.5277 -5.3116 14 7 3.5139 -0.8483 -1.2139 15 6 4.0195 -1.4651 0.0280 16 6 3.5111 -0.6279 1.1922 17 1 3.8381 0.4063 1.0837 18 6 3.8833 -1.1722 2.5743 19 6 2.6564 -0.8288 3.4582 20 6 1.6368 -0.1720 2.4886 21 7 2.0246 -0.7041 1.1750 22 1 -0.3633 0.4992 0.8983 23 1 -0.3633 -1.0276 -0.0167 24 1 -0.3634 0.5283 -0.8815 25 1 2.9344 -1.9161 -4.7051 26 1 3.8558 -1.3389 -2.0265 27 1 5.1095 -1.4690 0.0226 28 1 3.6461 -2.4855 0.1146 29 1 4.0334 -2.2510 2.5320 30 1 4.7771 -0.6758 2.9522 31 1 2.2364 -1.7358 3.8927 32 1 2.9395 -0.1287 4.2442 33 1 1.7334 0.9135 2.5072 34 1 0.6195 -0.4724 2.7397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259607462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:48 Heat of formation + Delta-G solvation = -14.154038 kcal Electronic energy + Delta-G solvation = -14829.511694 eV Core-core repulsion = 12567.896482 eV Total energy + Delta-G solvation = -2261.615212 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84615 -36.88319 -34.45220 -34.11280 -30.55273 -29.59253 -28.12142 -25.87435 -23.57028 -22.42338 -21.12609 -20.50787 -18.59951 -16.92235 -16.63330 -16.22152 -15.87268 -15.45668 -15.23395 -14.40732 -14.12649 -13.68419 -13.61618 -13.20439 -13.02534 -12.81420 -12.75596 -12.39651 -12.25942 -12.08383 -11.76888 -11.69894 -11.32229 -11.06697 -11.01697 -10.61533 -9.27257 -8.75919 -8.16194 -6.26230 1.42558 1.44657 1.52065 2.42395 3.08936 3.16445 3.70454 3.86139 4.00121 4.11558 4.33777 4.40748 4.49342 4.52507 4.64153 4.69473 4.77235 4.83615 4.98023 5.01093 5.04972 5.07705 5.13710 5.27867 5.34850 5.35713 5.55913 5.77842 6.00796 6.23880 6.45214 6.63533 7.02817 7.11796 7.45134 8.93726 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.051088 B = 0.009801 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.946047 B = 2856.027529 C = 3254.031729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.099 3.901 3 H 0.017 0.983 4 C 0.236 3.764 5 H -0.046 1.046 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.019 3.981 9 N -0.925 5.925 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.271 1.271 14 N -0.706 5.706 15 C 0.068 3.932 16 C 0.066 3.934 17 H 0.036 0.964 18 C -0.108 4.108 19 C -0.110 4.110 20 C 0.038 3.962 21 N -0.540 5.540 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.265 0.735 26 H 0.351 0.649 27 H 0.075 0.925 28 H 0.009 0.991 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 1.858 11.627 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.010 4.010 3 H 0.035 0.965 4 C 0.128 3.872 5 H -0.029 1.029 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.180 4.180 9 N -0.566 5.566 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.196 1.196 14 N -0.342 5.342 15 C -0.062 4.062 16 C -0.042 4.042 17 H 0.055 0.945 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.090 4.090 21 N -0.266 5.266 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.173 0.827 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.238 1.859 11.660 11.810 hybrid contribution -0.159 0.141 -1.416 1.432 sum 0.078 2.000 10.244 10.438 Atomic orbital electron populations 1.21578 0.93680 1.01313 1.01272 1.21519 0.95682 0.94001 0.89844 0.96529 1.18870 0.84636 0.91936 0.91807 1.02856 1.21427 1.33425 1.09972 0.91385 0.92384 1.25767 0.94668 0.95470 1.02079 1.69749 1.39450 1.22429 1.24962 0.85534 0.78627 0.78607 0.78333 1.19857 1.20877 1.19566 1.60459 1.12516 1.56981 1.04240 1.21847 0.98657 0.94602 0.91059 1.22418 0.88509 0.97704 0.95594 0.94549 1.22110 0.98745 1.01556 0.92227 1.22543 0.94107 1.01302 0.96830 1.22910 1.00370 0.96876 0.88850 1.63992 1.06987 1.53713 1.01886 0.91717 0.93572 0.92464 0.92583 0.82660 0.90707 0.97281 0.91029 0.89446 0.90313 0.89257 0.94792 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 8.95 71.98 0.64 -4.13 16 2 C 0.10 4.43 2.14 45.39 0.10 4.52 16 3 H 0.02 0.80 8.02 -2.39 -0.02 0.78 16 4 C 0.24 12.66 2.13 44.46 0.09 12.76 16 5 H -0.05 -2.83 8.14 -2.39 -0.02 -2.85 16 6 C -0.52 -29.56 8.09 25.60 0.21 -29.35 16 7 H 0.06 3.20 6.97 -2.91 -0.02 3.18 16 8 C 0.02 1.06 5.36 84.65 0.45 1.51 16 9 N -0.93 -53.70 11.38 21.44 0.24 -53.46 16 10 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 N -0.71 -36.52 6.40 -494.75 -3.17 -39.68 16 15 C 0.07 2.89 6.34 85.89 0.54 3.44 16 16 C 0.07 2.44 2.62 44.30 0.12 2.56 16 17 H 0.04 1.44 8.00 -2.38 -0.02 1.42 16 18 C -0.11 -2.87 6.66 31.34 0.21 -2.66 16 19 C -0.11 -2.56 7.06 32.08 0.23 -2.33 16 20 C 0.04 1.11 5.81 87.08 0.51 1.61 16 21 N -0.54 -20.96 4.62 -839.17 -3.88 -24.84 16 22 H 0.06 2.12 7.40 -2.39 -0.02 2.10 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 2.34 6.95 -2.38 -0.02 2.33 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.35 19.63 6.62 -89.70 -0.59 19.03 16 27 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 1.89 8.02 -2.39 -0.02 1.87 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 2.26 7.95 -2.39 -0.02 2.24 16 Total: -1.00 -62.42 261.78 -1.20 -63.62 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.47 Total: 20.22 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 3.10 Total: -12.07 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.80 Total: -117.98 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -62.42 -1.20 -63.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259607462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.470 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds