Wall clock time and date at job start Mon Mar 30 2020 03:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.82930 * 2 1 4 4 C 1.53717 * 109.83908 * 239.09938 * 2 1 3 5 5 H 1.09004 * 109.17612 * 56.73994 * 4 2 1 6 6 C 1.50695 * 109.18077 * 175.97338 * 4 2 1 7 7 H 1.08001 * 119.99658 * 359.97438 * 6 4 2 8 8 C 1.37874 * 119.99956 * 179.97438 * 6 4 2 9 9 N 1.31511 * 120.00232 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00069 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46877 * 59.99927 * 10 8 6 12 12 H 1.48497 * 109.47366 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47438 * 300.00559 * 10 8 6 14 14 N 1.46599 * 110.96690 * 296.35860 * 4 2 1 15 15 C 1.47552 * 112.69581 * 305.19618 * 14 4 2 16 16 C 1.52295 * 107.43876 * 57.72707 * 15 14 4 17 17 H 1.08997 * 111.41666 * 59.13273 * 16 15 14 18 18 C 1.53823 * 113.75410 * 185.49618 * 16 15 14 19 19 C 1.55408 * 101.98379 * 155.22736 * 18 16 15 20 20 C 1.54879 * 104.96886 * 337.72042 * 19 18 16 21 21 N 1.45473 * 109.89299 * 120.94061 * 2 1 3 22 22 H 1.08994 * 109.47239 * 180.90294 * 1 2 3 23 23 H 1.08996 * 109.46825 * 300.90360 * 1 2 3 24 24 H 1.09001 * 109.47100 * 60.90273 * 1 2 3 25 25 H 0.96995 * 120.00251 * 179.97438 * 9 8 6 26 26 H 1.00901 * 111.00374 * 70.41307 * 14 4 2 27 27 H 1.09003 * 109.86573 * 298.24292 * 15 14 4 28 28 H 1.09001 * 109.92520 * 177.23991 * 15 14 4 29 29 H 1.09006 * 110.92424 * 273.39624 * 18 16 15 30 30 H 1.08991 * 110.93541 * 37.01730 * 18 16 15 31 31 H 1.09004 * 110.33726 * 96.59189 * 19 18 16 32 32 H 1.09000 * 110.33860 * 218.84400 * 19 18 16 33 33 H 1.09004 * 110.17279 * 236.95244 * 20 19 18 34 34 H 1.09003 * 110.17830 * 115.13930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0517 -0.7426 -1.2407 5 1 1.6420 -0.2752 -2.1362 6 6 3.5552 -0.6485 -1.2782 7 1 4.0824 -0.1158 -0.5006 8 6 4.2577 -1.2426 -2.3051 9 7 3.6156 -1.8909 -3.2522 10 14 6.1214 -1.1254 -2.3520 11 1 6.6872 -1.7433 -1.1259 12 1 6.6325 -1.8411 -3.5486 13 1 6.5262 0.3018 -2.4190 14 7 1.6580 -2.1544 -1.2112 15 6 2.0768 -2.8364 0.0284 16 6 1.4593 -2.0794 1.1968 17 1 0.3718 -2.0579 1.1269 18 6 1.9126 -2.5903 2.5751 19 6 1.7045 -1.3360 3.4686 20 6 1.7245 -0.1379 2.4873 21 7 2.0250 -0.7033 1.1733 22 1 -0.3633 -1.0275 0.0162 23 1 -0.3633 0.5278 0.8818 24 1 -0.3633 0.4998 -0.8980 25 1 4.1098 -2.3085 -3.9748 26 1 0.6656 -2.2564 -1.3624 27 1 3.1636 -2.8214 0.1104 28 1 1.7200 -3.8664 0.0245 29 1 1.2844 -3.4157 2.9102 30 1 2.9617 -2.8852 2.5553 31 1 0.7436 -1.3906 3.9803 32 1 2.5153 -1.2471 4.1917 33 1 2.4990 0.5724 2.7769 34 1 0.7509 0.3519 2.4720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259607481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:51 Heat of formation + Delta-G solvation = 20.705130 kcal Electronic energy + Delta-G solvation = -15130.307655 eV Core-core repulsion = 12870.204049 eV Total energy + Delta-G solvation = -2260.103605 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61920 -35.10584 -32.39195 -31.89517 -28.70358 -28.07777 -26.60909 -23.87049 -22.16697 -20.75629 -20.39334 -18.17071 -16.10692 -15.41549 -15.07772 -14.59972 -14.25722 -13.47426 -13.44289 -13.00692 -12.58194 -12.19533 -11.73810 -11.42762 -11.17120 -11.10723 -11.01317 -10.78139 -10.58501 -10.48462 -10.41516 -10.02920 -9.61871 -9.30828 -8.83808 -8.20887 -7.53450 -6.60722 -5.67810 -3.75811 3.46375 3.50509 3.54288 4.61740 4.66381 5.06364 5.18575 5.34001 5.46538 5.58082 5.82018 5.83426 5.86071 5.95421 5.97931 6.03551 6.12716 6.17605 6.38816 6.43005 6.46469 6.51966 6.60821 6.72063 6.92305 7.21557 7.45958 7.80446 8.12591 8.18617 8.38575 8.71376 9.07248 9.36941 9.88319 11.37290 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036336 B = 0.011870 C = 0.011064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.390979 B = 2358.382376 C = 2530.181458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 H 0.071 0.929 4 C 0.234 3.766 5 H 0.039 0.961 6 C -0.503 4.503 7 H 0.056 0.944 8 C 0.078 3.922 9 N -0.857 5.857 10 Si 0.879 3.121 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.281 1.281 14 N -0.652 5.652 15 C 0.093 3.907 16 C 0.026 3.974 17 H 0.042 0.958 18 C -0.112 4.112 19 C -0.125 4.125 20 C 0.046 3.954 21 N -0.506 5.506 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.252 0.748 26 H 0.295 0.705 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 0.222 9.392 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.054 4.054 3 H 0.090 0.910 4 C 0.126 3.874 5 H 0.057 0.943 6 C -0.542 4.542 7 H 0.074 0.926 8 C -0.127 4.127 9 N -0.493 5.493 10 Si 0.707 3.293 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.278 5.278 15 C -0.037 4.037 16 C -0.084 4.084 17 H 0.060 0.940 18 C -0.151 4.151 19 C -0.164 4.164 20 C -0.083 4.083 21 N -0.230 5.230 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.339 -0.038 8.764 9.779 hybrid contribution -0.530 0.568 0.805 1.119 sum -4.869 0.530 9.569 10.750 Atomic orbital electron populations 1.22508 1.00125 1.01197 1.00766 1.22563 0.90033 0.99259 0.93536 0.91041 1.19225 0.96153 0.83156 0.88875 0.94331 1.20825 0.90389 1.34678 1.08347 0.92592 1.24928 0.96916 0.95116 0.95740 1.70081 1.34247 1.33603 1.11415 0.86918 0.87559 0.77783 0.77014 1.20566 1.21770 1.20717 1.60401 1.16093 1.17284 1.33981 1.21704 1.01701 0.94198 0.86104 1.23515 0.96435 0.91672 0.96783 0.93982 1.22312 1.01828 0.96164 0.94829 1.22613 1.00705 0.95343 0.97695 1.22503 0.98564 0.96650 0.90545 1.62849 1.57773 1.02227 1.00151 0.92812 0.94203 0.92452 0.93858 0.88900 0.89646 0.93539 0.92173 0.90683 0.92508 0.91698 0.91447 0.95505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 8.40 37.16 0.31 -2.98 16 2 C 0.06 1.18 2.63 -68.11 -0.18 1.01 16 3 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.23 5.75 2.36 -68.66 -0.16 5.59 16 5 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.50 -13.88 7.31 -34.44 -0.25 -14.13 16 7 H 0.06 1.59 7.73 -52.49 -0.41 1.18 16 8 C 0.08 2.19 5.38 -17.82 -0.10 2.09 16 9 N -0.86 -25.13 12.69 55.43 0.70 -24.43 16 10 Si 0.88 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 N -0.65 -15.29 5.61 -107.67 -0.60 -15.89 16 15 C 0.09 1.97 6.08 -3.83 -0.02 1.95 16 16 C 0.03 0.47 2.40 -66.59 -0.16 0.31 16 17 H 0.04 0.76 5.84 -51.93 -0.30 0.46 16 18 C -0.11 -1.74 6.63 -25.02 -0.17 -1.91 16 19 C -0.13 -1.78 6.99 -24.46 -0.17 -1.95 16 20 C 0.05 0.76 6.72 -3.23 -0.02 0.73 16 21 N -0.51 -10.00 4.23 -217.15 -0.92 -10.92 16 22 H 0.05 0.94 5.05 -51.93 -0.26 0.68 16 23 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.30 6.37 7.83 -39.29 -0.31 6.06 16 27 H 0.09 2.08 7.46 -51.93 -0.39 1.69 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.03 0.43 6.51 -51.93 -0.34 0.09 16 LS Contribution 257.01 15.07 3.87 3.87 Total: -1.00 -28.98 257.01 -8.18 -37.16 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.29 Total: 2.61 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.92 Total: -9.28 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.82 Total: -51.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.98 -8.18 -37.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259607481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.860 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds