Wall clock time and date at job start Mon Mar 30 2020 03:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.82930 * 2 1 4 4 C 1.53717 * 109.83908 * 239.09938 * 2 1 3 5 5 H 1.09004 * 109.17612 * 56.73994 * 4 2 1 6 6 C 1.50695 * 109.18077 * 175.97338 * 4 2 1 7 7 H 1.08001 * 119.99658 * 359.97438 * 6 4 2 8 8 C 1.37874 * 119.99956 * 179.97438 * 6 4 2 9 9 N 1.31511 * 120.00232 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00069 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46877 * 59.99927 * 10 8 6 12 12 H 1.48497 * 109.47366 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47438 * 300.00559 * 10 8 6 14 14 N 1.46599 * 110.96690 * 296.35860 * 4 2 1 15 15 C 1.47552 * 112.69581 * 305.19618 * 14 4 2 16 16 C 1.52295 * 107.43876 * 57.72707 * 15 14 4 17 17 H 1.08997 * 111.41666 * 59.13273 * 16 15 14 18 18 C 1.53823 * 113.75410 * 185.49618 * 16 15 14 19 19 C 1.55408 * 101.98379 * 155.22736 * 18 16 15 20 20 C 1.54879 * 104.96886 * 337.72042 * 19 18 16 21 21 N 1.45473 * 109.89299 * 120.94061 * 2 1 3 22 22 H 1.08994 * 109.47239 * 180.90294 * 1 2 3 23 23 H 1.08996 * 109.46825 * 300.90360 * 1 2 3 24 24 H 1.09001 * 109.47100 * 60.90273 * 1 2 3 25 25 H 0.96995 * 120.00251 * 179.97438 * 9 8 6 26 26 H 1.00901 * 111.00374 * 70.41307 * 14 4 2 27 27 H 1.09003 * 109.86573 * 298.24292 * 15 14 4 28 28 H 1.09001 * 109.92520 * 177.23991 * 15 14 4 29 29 H 1.09006 * 110.92424 * 273.39624 * 18 16 15 30 30 H 1.08991 * 110.93541 * 37.01730 * 18 16 15 31 31 H 1.09004 * 110.33726 * 96.59189 * 19 18 16 32 32 H 1.09000 * 110.33860 * 218.84400 * 19 18 16 33 33 H 1.09004 * 110.17279 * 236.95244 * 20 19 18 34 34 H 1.09003 * 110.17830 * 115.13930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0517 -0.7426 -1.2407 5 1 1.6420 -0.2752 -2.1362 6 6 3.5552 -0.6485 -1.2782 7 1 4.0824 -0.1158 -0.5006 8 6 4.2577 -1.2426 -2.3051 9 7 3.6156 -1.8909 -3.2522 10 14 6.1214 -1.1254 -2.3520 11 1 6.6872 -1.7433 -1.1259 12 1 6.6325 -1.8411 -3.5486 13 1 6.5262 0.3018 -2.4190 14 7 1.6580 -2.1544 -1.2112 15 6 2.0768 -2.8364 0.0284 16 6 1.4593 -2.0794 1.1968 17 1 0.3718 -2.0579 1.1269 18 6 1.9126 -2.5903 2.5751 19 6 1.7045 -1.3360 3.4686 20 6 1.7245 -0.1379 2.4873 21 7 2.0250 -0.7033 1.1733 22 1 -0.3633 -1.0275 0.0162 23 1 -0.3633 0.5278 0.8818 24 1 -0.3633 0.4998 -0.8980 25 1 4.1098 -2.3085 -3.9748 26 1 0.6656 -2.2564 -1.3624 27 1 3.1636 -2.8214 0.1104 28 1 1.7200 -3.8664 0.0245 29 1 1.2844 -3.4157 2.9102 30 1 2.9617 -2.8852 2.5553 31 1 0.7436 -1.3906 3.9803 32 1 2.5153 -1.2471 4.1917 33 1 2.4990 0.5724 2.7769 34 1 0.7509 0.3519 2.4720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259607481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:51 Heat of formation + Delta-G solvation = 0.234233 kcal Electronic energy + Delta-G solvation = -15131.195339 eV Core-core repulsion = 12870.204049 eV Total energy + Delta-G solvation = -2260.991290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14352 -36.72765 -34.06782 -33.85855 -30.25206 -29.49472 -28.41305 -25.69552 -23.81988 -22.40779 -21.65792 -19.81270 -18.09765 -17.05541 -16.70389 -16.15196 -16.11264 -15.07571 -14.97456 -14.48158 -14.31749 -13.71572 -13.51317 -12.91183 -12.77502 -12.65685 -12.60551 -12.50407 -12.30099 -12.21933 -11.85991 -11.39619 -11.37891 -11.07735 -10.89821 -10.38473 -9.04088 -8.36369 -7.82781 -5.97653 1.44854 1.45899 1.52788 2.54528 3.18255 3.40213 3.77724 3.85584 4.08554 4.13502 4.23744 4.39941 4.42448 4.47672 4.56061 4.71263 4.78889 4.94066 4.99799 5.02905 5.04532 5.08588 5.20200 5.28767 5.39999 5.44707 5.61109 5.91506 6.29069 6.38193 6.66763 6.79009 7.10399 7.40082 7.69294 9.19116 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036336 B = 0.011870 C = 0.011064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.390979 B = 2358.382376 C = 2530.181458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 H 0.055 0.945 4 C 0.236 3.764 5 H 0.005 0.995 6 C -0.509 4.509 7 H 0.041 0.959 8 C 0.032 3.968 9 N -0.885 5.885 10 Si 0.936 3.064 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.277 1.277 14 N -0.671 5.671 15 C 0.097 3.903 16 C 0.032 3.968 17 H 0.054 0.946 18 C -0.109 4.109 19 C -0.116 4.116 20 C 0.043 3.957 21 N -0.533 5.533 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.249 0.751 26 H 0.307 0.693 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -0.016 11.309 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.047 4.047 3 H 0.073 0.927 4 C 0.127 3.873 5 H 0.023 0.977 6 C -0.549 4.549 7 H 0.059 0.941 8 C -0.170 4.170 9 N -0.523 5.523 10 Si 0.763 3.237 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.202 1.202 14 N -0.298 5.298 15 C -0.033 4.033 16 C -0.078 4.078 17 H 0.072 0.928 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.085 4.085 21 N -0.258 5.258 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.123 0.877 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.106 -0.268 10.701 11.860 hybrid contribution -0.289 0.654 0.210 0.746 sum -5.395 0.386 10.911 12.178 Atomic orbital electron populations 1.22343 0.97353 1.01735 1.01825 1.22206 0.92159 0.97694 0.92682 0.92652 1.18971 0.94485 0.84265 0.89573 0.97681 1.21048 0.92276 1.33925 1.07616 0.94051 1.25549 1.00699 0.95122 0.95639 1.70201 1.35490 1.34695 1.11935 0.86005 0.83054 0.77815 0.76825 1.20574 1.21451 1.20215 1.60141 1.16971 1.16722 1.36013 1.21588 0.99490 0.95498 0.86703 1.23397 0.96663 0.90580 0.97126 0.92811 1.22304 1.01539 0.97680 0.93237 1.22595 1.02674 0.93052 0.97025 1.22586 0.98938 0.97714 0.89238 1.62727 1.58896 1.03072 1.01107 0.92452 0.92178 0.92309 0.94161 0.87665 0.93544 0.91681 0.89401 0.92018 0.89958 0.90444 0.91838 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 8.40 71.98 0.60 -5.19 16 2 C 0.06 2.63 2.63 45.42 0.12 2.75 16 3 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.24 11.82 2.36 44.47 0.10 11.93 16 5 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 6 C -0.51 -28.78 7.31 25.60 0.19 -28.59 16 7 H 0.04 2.40 7.73 -2.91 -0.02 2.38 16 8 C 0.03 1.81 5.38 84.65 0.46 2.27 16 9 N -0.89 -53.00 12.69 21.45 0.27 -52.73 16 10 Si 0.94 45.78 29.54 68.60 2.03 47.81 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 14 N -0.67 -31.71 5.61 -494.55 -2.77 -34.49 16 15 C 0.10 4.06 6.08 85.94 0.52 4.59 16 16 C 0.03 1.10 2.40 44.59 0.11 1.21 16 17 H 0.05 1.77 5.84 -2.39 -0.01 1.75 16 18 C -0.11 -3.03 6.63 31.70 0.21 -2.82 16 19 C -0.12 -2.83 6.99 32.06 0.22 -2.60 16 20 C 0.04 1.31 6.72 87.08 0.59 1.89 16 21 N -0.53 -20.44 4.23 -840.93 -3.56 -24.00 16 22 H 0.06 1.87 5.05 -2.39 -0.01 1.85 16 23 H 0.06 1.76 6.75 -2.39 -0.02 1.74 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.31 13.16 7.83 -89.69 -0.70 12.45 16 27 H 0.05 2.29 7.46 -2.39 -0.02 2.28 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.06 1.88 8.11 -2.39 -0.02 1.86 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.04 1.06 6.51 -2.39 -0.02 1.05 16 Total: -1.00 -62.78 257.01 -0.54 -63.31 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.38 Total: 14.67 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 3.12 Total: -14.57 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -6.06 Total: -111.22 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -62.78 -0.54 -63.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259607481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.548 kcal (2) G-P(sol) polarization free energy of solvation -62.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds