Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47124 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46953 * 119.99595 * 3 2 1 6 6 H 1.48500 * 109.47039 * 239.99390 * 3 2 1 7 7 C 1.37872 * 119.99278 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00537 * 15.36470 * 7 2 1 9 9 C 1.50703 * 119.99716 * 195.35654 * 7 2 1 10 10 H 1.08997 * 109.54034 * 305.60465 * 9 7 2 11 11 C 1.52931 * 109.54315 * 185.43686 * 9 7 2 12 12 N 1.47305 * 109.64959 * 298.86231 * 11 9 7 13 13 C 1.47051 * 109.86194 * 177.88109 * 12 11 9 14 14 C 1.52914 * 109.87439 * 184.82274 * 13 12 11 15 15 C 1.53181 * 108.99892 * 300.39434 * 14 13 12 16 16 C 1.53013 * 108.87427 * 58.28835 * 15 14 13 17 17 C 1.46829 * 111.22901 * 301.63104 * 12 11 9 18 18 H 1.08999 * 109.66180 * 297.13523 * 17 12 11 19 19 C 1.53147 * 109.75355 * 57.49570 * 17 12 11 20 20 N 1.46827 * 109.76594 * 302.53546 * 19 17 12 21 21 H 0.97001 * 120.00532 * 174.72821 * 1 2 3 22 22 H 1.09002 * 109.42522 * 59.03520 * 11 9 7 23 23 H 1.08993 * 109.42635 * 178.86297 * 11 9 7 24 24 H 1.09003 * 109.40016 * 64.70239 * 13 12 11 25 25 H 1.08992 * 109.33596 * 304.90730 * 13 12 11 26 26 H 1.09002 * 109.54702 * 180.54580 * 14 13 12 27 27 H 1.09001 * 109.55440 * 60.25269 * 14 13 12 28 28 H 1.08991 * 109.57315 * 298.47044 * 15 14 13 29 29 H 1.09006 * 109.57098 * 178.10126 * 15 14 13 30 30 H 1.09002 * 109.43850 * 182.01775 * 16 15 14 31 31 H 1.08998 * 109.41997 * 62.10208 * 16 15 14 32 32 H 1.09003 * 109.41815 * 182.44501 * 19 17 12 33 33 H 1.09000 * 109.42581 * 62.63149 * 19 17 12 34 34 H 1.00909 * 111.00098 * 183.23161 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1031 1.6962 -1.2124 7 6 2.0044 -1.1941 0.0005 8 1 1.4933 -2.1128 -0.2469 9 6 3.4711 -1.2174 0.3462 10 1 4.0082 -0.5201 -0.2967 11 6 4.0223 -2.6292 0.1425 12 7 3.3194 -3.5687 1.0331 13 6 3.8106 -4.9359 0.8049 14 6 2.9992 -5.9261 1.6413 15 6 3.1428 -5.5627 3.1225 16 6 2.6562 -4.1269 3.3294 17 6 3.4644 -3.1766 2.4406 18 1 4.5156 -3.2165 2.7260 19 6 2.9339 -1.7536 2.6388 20 7 3.6511 -0.8284 1.7526 21 1 -0.4851 -0.8365 -0.0772 22 1 3.8745 -2.9300 -0.8947 23 1 5.0874 -2.6394 0.3736 24 1 4.8607 -4.9957 1.0907 25 1 3.7079 -5.1846 -0.2512 26 1 3.3739 -6.9362 1.4756 27 1 1.9494 -5.8730 1.3529 28 1 4.1892 -5.6397 3.4175 29 1 2.5407 -6.2427 3.7253 30 1 2.7878 -3.8463 4.3744 31 1 1.6006 -4.0605 3.0660 32 1 3.0838 -1.4521 3.6755 33 1 1.8696 -1.7277 2.4050 34 1 3.3527 0.1233 1.9055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259656232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -1.536334 kcal Electronic energy + Delta-G solvation = -14991.830308 eV Core-core repulsion = 12730.762240 eV Total energy + Delta-G solvation = -2261.068068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.15102 -35.66218 -32.59944 -32.27718 -30.47030 -28.42700 -24.65108 -23.80852 -22.59209 -21.60388 -19.39725 -18.67195 -17.01932 -15.76124 -15.02274 -14.48928 -14.06582 -13.78066 -13.61800 -13.13053 -12.89129 -12.60349 -12.30957 -12.07755 -11.45862 -10.94576 -10.73563 -10.72489 -10.54363 -10.40617 -10.24014 -10.00245 -9.72504 -9.46730 -8.95914 -8.34146 -7.60074 -7.18272 -6.32991 -4.00823 3.32777 3.41653 3.58107 4.46904 4.51743 5.09585 5.16828 5.18628 5.30995 5.46714 5.72401 5.78092 5.83567 5.91507 5.97417 6.05856 6.14957 6.19979 6.29964 6.35442 6.43069 6.45094 6.52972 6.62504 6.74016 7.10307 7.18981 7.75988 7.87866 8.01807 8.28386 8.50248 8.54220 9.06883 9.68877 10.99267 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046551 B = 0.010533 C = 0.010498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.349150 B = 2657.694005 C = 2666.584813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 1.046 2.954 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.284 1.284 7 C -0.597 4.597 8 H 0.065 0.935 9 C 0.171 3.829 10 H 0.038 0.962 11 C 0.083 3.917 12 N -0.511 5.511 13 C 0.053 3.947 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.113 4.113 17 C 0.100 3.900 18 H 0.030 0.970 19 C 0.071 3.929 20 N -0.702 5.702 21 H 0.267 0.733 22 H 0.064 0.936 23 H 0.012 0.988 24 H 0.021 0.979 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -7.652 4.765 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.183 4.183 3 Si 0.875 3.125 4 H -0.212 1.212 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.637 4.637 8 H 0.083 0.917 9 C 0.063 3.937 10 H 0.055 0.945 11 C -0.045 4.045 12 N -0.236 5.236 13 C -0.076 4.076 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.009 4.009 18 H 0.048 0.952 19 C -0.059 4.059 20 N -0.336 5.336 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.030 0.970 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.088 -6.297 4.776 10.617 hybrid contribution 0.110 -1.444 -0.114 1.453 sum 7.198 -7.741 4.662 11.553 Atomic orbital electron populations 1.70826 1.06862 1.30807 1.45949 1.25774 0.96462 1.02252 0.93842 0.83980 0.75186 0.76274 0.77039 1.21216 1.20451 1.20999 1.22516 0.94432 0.95952 1.50826 0.91683 1.19516 0.96507 0.91366 0.86329 0.94464 1.22012 0.93129 0.93726 0.95587 1.62208 1.56256 1.00513 1.04614 1.22081 0.95673 0.90232 0.99579 1.21560 1.01347 0.97417 0.94978 1.21548 1.00523 0.96951 0.96498 1.21622 1.01042 0.93956 0.98497 1.21497 0.96548 0.94816 0.88032 0.95178 1.21671 0.98614 0.90889 0.94709 1.61554 1.59030 1.05747 1.07283 0.92283 0.91727 0.96975 0.96091 0.91456 0.92325 0.91172 0.92734 0.92323 0.92157 0.91100 0.93278 0.92735 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.88 13.70 55.43 0.76 -27.12 16 2 C 0.02 0.61 5.42 -17.82 -0.10 0.51 16 3 Si 1.05 24.95 26.47 -169.99 -4.50 20.45 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.08 5.60 56.52 0.32 -5.76 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.60 -16.56 7.19 -34.44 -0.25 -16.81 16 8 H 0.06 2.01 7.88 -52.49 -0.41 1.59 16 9 C 0.17 4.12 2.59 -68.83 -0.18 3.94 16 10 H 0.04 0.91 6.84 -51.93 -0.36 0.55 16 11 C 0.08 1.80 4.94 -3.64 -0.02 1.78 16 12 N -0.51 -10.37 4.25 -226.14 -0.96 -11.33 16 13 C 0.05 0.88 5.38 -3.79 -0.02 0.86 16 14 C -0.12 -1.66 6.10 -26.68 -0.16 -1.82 16 15 C -0.12 -1.62 6.01 -26.63 -0.16 -1.78 16 16 C -0.11 -1.83 5.29 -26.64 -0.14 -1.97 16 17 C 0.10 1.92 2.36 -67.59 -0.16 1.76 16 18 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 19 C 0.07 1.53 5.62 -3.79 -0.02 1.51 16 20 N -0.70 -16.06 6.71 -107.87 -0.72 -16.78 16 21 H 0.27 8.27 8.73 -40.82 -0.36 7.92 16 22 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 1.36 7.06 -51.93 -0.37 0.99 16 34 H 0.33 7.67 5.39 -39.29 -0.21 7.46 16 LS Contribution 255.35 15.07 3.85 3.85 Total: -1.00 -29.58 255.35 -8.43 -38.01 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.65 Total: 4.93 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.21 Total: -12.01 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.93 Total: -55.23 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.50 Total: 20.45 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.58 -8.43 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259656232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.477 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds