Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47124 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46953 * 119.99595 * 3 2 1 6 6 H 1.48500 * 109.47039 * 239.99390 * 3 2 1 7 7 C 1.37872 * 119.99278 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00537 * 15.36470 * 7 2 1 9 9 C 1.50703 * 119.99716 * 195.35654 * 7 2 1 10 10 H 1.08997 * 109.54034 * 305.60465 * 9 7 2 11 11 C 1.52931 * 109.54315 * 185.43686 * 9 7 2 12 12 N 1.47305 * 109.64959 * 298.86231 * 11 9 7 13 13 C 1.47051 * 109.86194 * 177.88109 * 12 11 9 14 14 C 1.52914 * 109.87439 * 184.82274 * 13 12 11 15 15 C 1.53181 * 108.99892 * 300.39434 * 14 13 12 16 16 C 1.53013 * 108.87427 * 58.28835 * 15 14 13 17 17 C 1.46829 * 111.22901 * 301.63104 * 12 11 9 18 18 H 1.08999 * 109.66180 * 297.13523 * 17 12 11 19 19 C 1.53147 * 109.75355 * 57.49570 * 17 12 11 20 20 N 1.46827 * 109.76594 * 302.53546 * 19 17 12 21 21 H 0.97001 * 120.00532 * 174.72821 * 1 2 3 22 22 H 1.09002 * 109.42522 * 59.03520 * 11 9 7 23 23 H 1.08993 * 109.42635 * 178.86297 * 11 9 7 24 24 H 1.09003 * 109.40016 * 64.70239 * 13 12 11 25 25 H 1.08992 * 109.33596 * 304.90730 * 13 12 11 26 26 H 1.09002 * 109.54702 * 180.54580 * 14 13 12 27 27 H 1.09001 * 109.55440 * 60.25269 * 14 13 12 28 28 H 1.08991 * 109.57315 * 298.47044 * 15 14 13 29 29 H 1.09006 * 109.57098 * 178.10126 * 15 14 13 30 30 H 1.09002 * 109.43850 * 182.01775 * 16 15 14 31 31 H 1.08998 * 109.41997 * 62.10208 * 16 15 14 32 32 H 1.09003 * 109.41815 * 182.44501 * 19 17 12 33 33 H 1.09000 * 109.42581 * 62.63149 * 19 17 12 34 34 H 1.00909 * 111.00098 * 183.23161 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1031 1.6962 -1.2124 7 6 2.0044 -1.1941 0.0005 8 1 1.4933 -2.1128 -0.2469 9 6 3.4711 -1.2174 0.3462 10 1 4.0082 -0.5201 -0.2967 11 6 4.0223 -2.6292 0.1425 12 7 3.3194 -3.5687 1.0331 13 6 3.8106 -4.9359 0.8049 14 6 2.9992 -5.9261 1.6413 15 6 3.1428 -5.5627 3.1225 16 6 2.6562 -4.1269 3.3294 17 6 3.4644 -3.1766 2.4406 18 1 4.5156 -3.2165 2.7260 19 6 2.9339 -1.7536 2.6388 20 7 3.6511 -0.8284 1.7526 21 1 -0.4851 -0.8365 -0.0772 22 1 3.8745 -2.9300 -0.8947 23 1 5.0874 -2.6394 0.3736 24 1 4.8607 -4.9957 1.0907 25 1 3.7079 -5.1846 -0.2512 26 1 3.3739 -6.9362 1.4756 27 1 1.9494 -5.8730 1.3529 28 1 4.1892 -5.6397 3.4175 29 1 2.5407 -6.2427 3.7253 30 1 2.7878 -3.8463 4.3744 31 1 1.6006 -4.0605 3.0660 32 1 3.0838 -1.4521 3.6755 33 1 1.8696 -1.7277 2.4050 34 1 3.3527 0.1233 1.9055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259656232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -23.885029 kcal Electronic energy + Delta-G solvation = -14992.799420 eV Core-core repulsion = 12730.762240 eV Total energy + Delta-G solvation = -2262.037180 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.69185 -37.30427 -34.37389 -34.08552 -32.06072 -30.04508 -26.61126 -25.41005 -24.03710 -23.24219 -20.70562 -20.60774 -19.04416 -17.48904 -16.48195 -16.01972 -15.73907 -15.41392 -15.15744 -14.81943 -14.44272 -14.21483 -14.04624 -13.77800 -12.91662 -12.59733 -12.40639 -12.27237 -12.09364 -12.00832 -11.76136 -11.59845 -11.33905 -11.16692 -10.78564 -10.54094 -9.31044 -9.01080 -8.57274 -6.30936 1.41764 1.50692 1.69218 2.46787 3.02121 3.13940 3.63899 3.89589 3.93298 4.03354 4.25742 4.38359 4.42553 4.50778 4.55053 4.63565 4.73657 4.76457 4.84386 4.94236 5.02456 5.08115 5.14310 5.19249 5.28451 5.39349 5.50066 5.90995 6.07230 6.23359 6.35648 6.43187 6.64258 6.75698 7.47694 8.67824 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046551 B = 0.010533 C = 0.010498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.349150 B = 2657.694005 C = 2666.584813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.031 4.031 3 Si 1.087 2.913 4 H -0.293 1.293 5 H -0.244 1.244 6 H -0.265 1.265 7 C -0.586 4.586 8 H 0.019 0.981 9 C 0.168 3.832 10 H 0.042 0.958 11 C 0.086 3.914 12 N -0.539 5.539 13 C 0.051 3.949 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.110 4.110 17 C 0.101 3.899 18 H 0.039 0.961 19 C 0.071 3.929 20 N -0.692 5.692 21 H 0.247 0.753 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.009 0.991 34 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 -8.243 5.992 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.228 4.228 3 Si 0.909 3.091 4 H -0.219 1.219 5 H -0.169 1.169 6 H -0.190 1.190 7 C -0.626 4.626 8 H 0.037 0.963 9 C 0.059 3.941 10 H 0.060 0.940 11 C -0.042 4.042 12 N -0.265 5.265 13 C -0.076 4.076 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.007 4.007 18 H 0.057 0.943 19 C -0.060 4.060 20 N -0.325 5.325 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.027 0.973 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.484 -6.930 6.011 13.195 hybrid contribution -0.666 -1.347 -0.508 1.587 sum 8.818 -8.277 5.503 13.287 Atomic orbital electron populations 1.70975 1.08229 1.29567 1.49171 1.27220 0.96312 1.06218 0.93030 0.83475 0.74601 0.71784 0.79206 1.21909 1.16926 1.19018 1.22554 0.96467 0.94006 1.49579 0.96267 1.19512 0.93897 0.93527 0.87117 0.93974 1.21880 0.93902 0.92567 0.95868 1.62170 1.57155 1.02084 1.05069 1.22175 0.96728 0.88554 1.00190 1.21571 0.99902 0.98401 0.95148 1.21537 1.01792 0.95321 0.96221 1.21613 0.99005 0.95293 0.98924 1.21524 0.97234 0.93906 0.88063 0.94306 1.21771 0.95812 0.92600 0.95773 1.61565 1.58612 1.05837 1.06478 0.94376 0.92284 0.95367 0.94678 0.91618 0.89182 0.93138 0.91113 0.90082 0.90026 0.93695 0.90675 0.97253 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.01 13.70 21.45 0.29 -59.71 16 2 C -0.03 -1.77 5.42 84.65 0.46 -1.32 16 3 Si 1.09 49.83 26.47 68.60 1.82 51.64 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.24 -9.83 5.60 99.48 0.56 -9.27 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.59 -33.38 7.19 25.60 0.18 -33.20 16 8 H 0.02 1.24 7.88 -2.91 -0.02 1.21 16 9 C 0.17 8.00 2.59 44.12 0.11 8.11 16 10 H 0.04 1.98 6.84 -2.39 -0.02 1.96 16 11 C 0.09 3.63 4.94 86.20 0.43 4.05 16 12 N -0.54 -21.49 4.25 -869.37 -3.69 -25.18 16 13 C 0.05 1.60 5.38 86.25 0.46 2.07 16 14 C -0.11 -2.95 6.10 30.63 0.19 -2.77 16 15 C -0.11 -2.68 6.01 30.66 0.18 -2.50 16 16 C -0.11 -3.35 5.29 30.66 0.16 -3.19 16 17 C 0.10 3.73 2.36 45.03 0.11 3.83 16 18 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 19 C 0.07 2.97 5.62 86.37 0.49 3.46 16 20 N -0.69 -30.58 6.71 -495.19 -3.32 -33.90 16 21 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 22 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 23 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 2.04 8.08 -2.39 -0.02 2.02 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.01 0.47 7.06 -2.39 -0.02 0.45 16 34 H 0.33 14.54 5.39 -89.69 -0.48 14.06 16 Total: -1.00 -65.89 255.35 -1.75 -67.64 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.39 Total: 20.96 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 2.77 Total: -21.44 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -6.72 Total: -118.80 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.82 Total: 51.64 kcal Total: -65.89 -1.75 -67.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259656232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.751 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds