Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86798 * 120.00409 * 2 1 4 4 H 1.48505 * 109.47176 * 239.99930 * 3 2 1 5 5 H 1.48501 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47149 * 119.99988 * 3 2 1 7 7 C 1.37882 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00027 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.61359 * 299.78450 * 9 7 2 11 11 C 1.52926 * 109.54396 * 179.57294 * 9 7 2 12 12 N 1.47281 * 109.74049 * 181.26870 * 11 9 7 13 13 C 1.47054 * 109.79080 * 182.04103 * 12 11 9 14 14 C 1.52913 * 109.81571 * 175.32020 * 13 12 11 15 15 C 1.53170 * 109.01350 * 59.62633 * 14 13 12 16 16 C 1.53009 * 108.87059 * 301.72325 * 15 14 13 17 17 C 1.46831 * 111.08407 * 58.46755 * 12 11 9 18 18 H 1.09002 * 109.70851 * 62.81467 * 17 12 11 19 19 C 1.53144 * 109.76807 * 302.43281 * 17 12 11 20 20 N 1.46837 * 109.76245 * 57.56328 * 19 17 12 21 21 H 0.97002 * 120.00052 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.41974 * 301.40485 * 11 9 7 23 23 H 1.08995 * 109.42328 * 61.28202 * 11 9 7 24 24 H 1.09002 * 109.40278 * 55.23379 * 13 12 11 25 25 H 1.08997 * 109.39779 * 295.40198 * 13 12 11 26 26 H 1.09002 * 109.54157 * 179.48413 * 14 13 12 27 27 H 1.08997 * 109.54942 * 299.76070 * 14 13 12 28 28 H 1.09003 * 109.57539 * 61.54193 * 15 14 13 29 29 H 1.09004 * 109.57372 * 181.90757 * 15 14 13 30 30 H 1.09006 * 109.44450 * 177.98419 * 16 15 14 31 31 H 1.08999 * 109.44664 * 297.92656 * 16 15 14 32 32 H 1.08999 * 109.42069 * 177.65484 * 19 17 12 33 33 H 1.09002 * 109.42558 * 297.53215 * 19 17 12 34 34 H 1.00902 * 110.99740 * 63.98238 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6259 -2.5608 0.8914 11 6 2.2431 -3.6628 -0.0096 12 7 1.5111 -4.9404 -0.0403 13 6 2.4630 -6.0607 -0.0008 14 6 1.7023 -7.3844 0.0848 15 6 0.7934 -7.5178 -1.1408 16 6 -0.1641 -6.3249 -1.1790 17 6 0.6395 -5.0216 -1.2191 18 1 1.2440 -4.9943 -2.1258 19 6 -0.3396 -3.8441 -1.2214 20 7 0.4054 -2.5789 -1.1997 21 1 -0.4850 0.8401 -0.0004 22 1 2.8806 -3.5879 -0.8906 23 1 2.8596 -3.6212 0.8883 24 1 3.1084 -5.9568 0.8715 25 1 3.0717 -6.0506 -0.9049 26 1 2.4116 -8.2119 0.1046 27 1 1.0971 -7.3994 0.9911 28 1 1.4003 -7.5280 -2.0462 29 1 0.2213 -8.4431 -1.0723 30 1 -0.7917 -6.3917 -2.0677 31 1 -0.7930 -6.3357 -0.2888 32 1 -0.9556 -3.8867 -2.1196 33 1 -0.9789 -3.9024 -0.3404 34 1 0.9562 -2.4692 -2.0379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259656241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -3.204159 kcal Electronic energy + Delta-G solvation = -14657.017606 eV Core-core repulsion = 12395.877216 eV Total energy + Delta-G solvation = -2261.140390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.23465 -35.47490 -32.57732 -32.44126 -30.18779 -28.40800 -24.98395 -23.46635 -22.60330 -21.59375 -19.42155 -19.37584 -16.56680 -15.16529 -14.90319 -14.40850 -14.17186 -13.84523 -13.64320 -13.28022 -12.99171 -12.63291 -12.20115 -11.75856 -11.21459 -11.03488 -10.91719 -10.71832 -10.65290 -10.41049 -10.38849 -10.18373 -9.94506 -9.62345 -8.90699 -8.37595 -7.77328 -6.75582 -5.84360 -3.99485 3.36947 3.41986 3.43882 4.37869 4.55688 5.03436 5.09087 5.13153 5.31467 5.46362 5.65200 5.71105 5.81200 5.88017 5.95445 6.05292 6.11235 6.16613 6.25354 6.31601 6.36660 6.38472 6.49586 6.55996 6.86177 6.89784 7.43080 7.70229 7.79731 7.95832 8.26950 8.62673 8.96642 9.15355 9.69107 11.20091 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.062592 B = 0.008370 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.237123 B = 3344.297468 C = 3655.674600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.227 3.773 10 H 0.046 0.954 11 C 0.028 3.972 12 N -0.526 5.526 13 C 0.052 3.948 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.109 4.109 17 C 0.049 3.951 18 H 0.027 0.973 19 C 0.064 3.936 20 N -0.647 5.647 21 H 0.256 0.744 22 H 0.017 0.983 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.022 0.978 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -11.787 -2.139 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.119 3.881 10 H 0.064 0.936 11 C -0.102 4.102 12 N -0.252 5.252 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.062 4.062 18 H 0.045 0.955 19 C -0.068 4.068 20 N -0.274 5.274 21 H 0.066 0.934 22 H 0.036 0.964 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.421 -11.297 -1.433 11.395 hybrid contribution 1.837 0.231 -1.020 2.113 sum 2.258 -11.065 -2.453 11.557 Atomic orbital electron populations 1.70100 1.05666 1.25795 1.46454 1.24940 0.94619 0.98536 0.94176 0.86831 0.79749 0.83793 0.78459 1.20436 1.21341 1.20381 1.20877 0.92249 0.90256 1.54689 0.92934 1.19152 0.88760 0.89856 0.90340 0.93584 1.23142 0.97656 0.90031 0.99322 1.62488 1.20458 1.02523 1.39707 1.22097 0.94186 0.91541 0.99851 1.21560 0.98549 0.96325 0.98837 1.21571 0.98008 0.98171 0.98002 1.21600 0.97696 0.93630 1.01865 1.22516 0.95669 0.97219 0.90838 0.95492 1.22144 0.95881 0.87789 1.00965 1.61189 1.32153 1.28793 1.05227 0.93369 0.96440 0.91655 0.91321 0.95961 0.92308 0.91241 0.92776 0.92331 0.92092 0.91257 0.92530 0.91345 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.76 12.77 55.43 0.71 -24.06 16 2 C 0.08 2.36 5.39 -17.82 -0.10 2.27 16 3 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.54 -14.97 8.70 -34.44 -0.30 -15.27 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.23 5.77 2.44 -68.83 -0.17 5.60 16 10 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 11 C 0.03 0.60 4.74 -3.65 -0.02 0.58 16 12 N -0.53 -10.01 4.72 -226.16 -1.07 -11.07 16 13 C 0.05 0.82 5.37 -3.78 -0.02 0.80 16 14 C -0.11 -1.52 6.10 -26.69 -0.16 -1.68 16 15 C -0.12 -1.53 6.01 -26.64 -0.16 -1.69 16 16 C -0.11 -1.59 5.29 -26.64 -0.14 -1.74 16 17 C 0.05 0.87 2.34 -67.59 -0.16 0.71 16 18 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 19 C 0.06 1.28 5.92 -3.78 -0.02 1.26 16 20 N -0.65 -15.58 5.89 -107.87 -0.64 -16.22 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 1.41 8.09 -51.93 -0.42 0.99 16 24 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.32 7.51 8.79 -39.29 -0.35 7.16 16 LS Contribution 265.28 15.07 4.00 4.00 Total: -1.00 -28.74 265.28 -9.06 -37.80 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.80 Total: 2.44 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.25 Total: -9.16 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.99 Total: -51.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.74 -9.06 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259656241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.596 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds