Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86798 * 120.00409 * 2 1 4 4 H 1.48505 * 109.47176 * 239.99930 * 3 2 1 5 5 H 1.48501 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47149 * 119.99988 * 3 2 1 7 7 C 1.37882 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00027 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.61359 * 299.78450 * 9 7 2 11 11 C 1.52926 * 109.54396 * 179.57294 * 9 7 2 12 12 N 1.47281 * 109.74049 * 181.26870 * 11 9 7 13 13 C 1.47054 * 109.79080 * 182.04103 * 12 11 9 14 14 C 1.52913 * 109.81571 * 175.32020 * 13 12 11 15 15 C 1.53170 * 109.01350 * 59.62633 * 14 13 12 16 16 C 1.53009 * 108.87059 * 301.72325 * 15 14 13 17 17 C 1.46831 * 111.08407 * 58.46755 * 12 11 9 18 18 H 1.09002 * 109.70851 * 62.81467 * 17 12 11 19 19 C 1.53144 * 109.76807 * 302.43281 * 17 12 11 20 20 N 1.46837 * 109.76245 * 57.56328 * 19 17 12 21 21 H 0.97002 * 120.00052 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.41974 * 301.40485 * 11 9 7 23 23 H 1.08995 * 109.42328 * 61.28202 * 11 9 7 24 24 H 1.09002 * 109.40278 * 55.23379 * 13 12 11 25 25 H 1.08997 * 109.39779 * 295.40198 * 13 12 11 26 26 H 1.09002 * 109.54157 * 179.48413 * 14 13 12 27 27 H 1.08997 * 109.54942 * 299.76070 * 14 13 12 28 28 H 1.09003 * 109.57539 * 61.54193 * 15 14 13 29 29 H 1.09004 * 109.57372 * 181.90757 * 15 14 13 30 30 H 1.09006 * 109.44450 * 177.98419 * 16 15 14 31 31 H 1.08999 * 109.44664 * 297.92656 * 16 15 14 32 32 H 1.08999 * 109.42069 * 177.65484 * 19 17 12 33 33 H 1.09002 * 109.42558 * 297.53215 * 19 17 12 34 34 H 1.00902 * 110.99740 * 63.98238 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6259 -2.5608 0.8914 11 6 2.2431 -3.6628 -0.0096 12 7 1.5111 -4.9404 -0.0403 13 6 2.4630 -6.0607 -0.0008 14 6 1.7023 -7.3844 0.0848 15 6 0.7934 -7.5178 -1.1408 16 6 -0.1641 -6.3249 -1.1790 17 6 0.6395 -5.0216 -1.2191 18 1 1.2440 -4.9943 -2.1258 19 6 -0.3396 -3.8441 -1.2214 20 7 0.4054 -2.5789 -1.1997 21 1 -0.4850 0.8401 -0.0004 22 1 2.8806 -3.5879 -0.8906 23 1 2.8596 -3.6212 0.8883 24 1 3.1084 -5.9568 0.8715 25 1 3.0717 -6.0506 -0.9049 26 1 2.4116 -8.2119 0.1046 27 1 1.0971 -7.3994 0.9911 28 1 1.4003 -7.5280 -2.0462 29 1 0.2213 -8.4431 -1.0723 30 1 -0.7917 -6.3917 -2.0677 31 1 -0.7930 -6.3357 -0.2888 32 1 -0.9556 -3.8867 -2.1196 33 1 -0.9789 -3.9024 -0.3404 34 1 0.9562 -2.4692 -2.0379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259656241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -23.727821 kcal Electronic energy + Delta-G solvation = -14657.907579 eV Core-core repulsion = 12395.877216 eV Total energy + Delta-G solvation = -2262.030363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.72073 -37.06611 -34.41412 -34.03107 -31.77841 -30.01513 -26.87234 -25.04717 -23.98180 -23.20766 -21.15227 -20.64971 -18.60704 -16.73841 -16.47762 -16.19324 -15.61137 -15.25379 -15.22386 -14.93292 -14.43230 -14.13785 -13.79883 -13.38017 -12.90019 -12.77117 -12.53191 -12.46479 -12.13634 -11.91783 -11.69042 -11.61356 -11.53539 -11.31293 -10.87421 -10.52849 -9.29378 -8.57864 -7.97715 -6.20880 1.44917 1.46127 1.53655 2.46201 2.99811 3.23006 3.83236 3.90808 3.94425 4.06628 4.24956 4.35762 4.42538 4.48174 4.55363 4.64979 4.77580 4.82208 4.85270 5.01220 5.03915 5.07681 5.15035 5.22445 5.30754 5.44482 5.53323 5.73452 6.09945 6.21465 6.33018 6.61416 7.07017 7.09319 7.52105 9.05795 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.062592 B = 0.008370 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.237123 B = 3344.297468 C = 3655.674600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.560 4.560 8 H 0.052 0.948 9 C 0.231 3.769 10 H 0.002 0.998 11 C 0.042 3.958 12 N -0.538 5.538 13 C 0.048 3.952 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.105 4.105 17 C 0.053 3.947 18 H 0.025 0.975 19 C 0.065 3.935 20 N -0.668 5.668 21 H 0.256 0.744 22 H 0.013 0.987 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.024 0.976 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -13.223 -2.828 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.169 4.169 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.070 0.930 9 C 0.123 3.877 10 H 0.020 0.980 11 C -0.087 4.087 12 N -0.264 5.264 13 C -0.079 4.079 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.143 4.143 17 C -0.057 4.057 18 H 0.043 0.957 19 C -0.065 4.065 20 N -0.295 5.295 21 H 0.065 0.935 22 H 0.031 0.969 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.058 -12.758 -2.122 12.977 hybrid contribution 1.616 0.641 -0.791 1.910 sum 2.674 -12.117 -2.913 12.746 Atomic orbital electron populations 1.70242 1.07199 1.26550 1.47543 1.25709 0.95425 1.01991 0.93735 0.85743 0.78428 0.79366 0.78689 1.19731 1.21048 1.19754 1.21250 0.92451 0.91675 1.54531 0.93019 1.18855 0.88779 0.90844 0.89244 0.98037 1.22772 0.96543 0.90583 0.98839 1.62464 1.21183 1.02209 1.40537 1.22225 0.94033 0.91660 1.00017 1.21564 0.98923 0.95323 0.98962 1.21571 0.97702 0.98170 0.97880 1.21580 0.97779 0.92482 1.02493 1.22436 0.95093 0.97974 0.90220 0.95720 1.22139 0.95997 0.87426 1.00962 1.60956 1.32185 1.31777 1.04536 0.93490 0.96861 0.92094 0.91134 0.95802 0.89525 0.91714 0.92235 0.89713 0.90217 0.91932 0.90522 0.93307 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.68 12.77 21.45 0.27 -52.40 16 2 C 0.04 2.01 5.39 84.66 0.46 2.46 16 3 Si 0.95 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.56 -31.62 8.70 25.60 0.22 -31.40 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 9 C 0.23 12.14 2.44 44.12 0.11 12.25 16 10 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 11 C 0.04 1.87 4.74 86.21 0.41 2.28 16 12 N -0.54 -20.20 4.72 -869.44 -4.10 -24.30 16 13 C 0.05 1.45 5.37 86.24 0.46 1.91 16 14 C -0.11 -2.55 6.10 30.62 0.19 -2.36 16 15 C -0.12 -2.51 6.01 30.65 0.18 -2.33 16 16 C -0.10 -2.79 5.29 30.65 0.16 -2.63 16 17 C 0.05 1.84 2.34 45.03 0.11 1.95 16 18 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 19 C 0.07 2.64 5.92 86.36 0.51 3.15 16 20 N -0.67 -32.90 5.89 -495.18 -2.92 -35.82 16 21 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 22 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 23 H 0.06 2.67 8.09 -2.39 -0.02 2.65 16 24 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 25 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.32 15.29 8.79 -89.69 -0.79 14.50 16 Total: -1.00 -62.53 265.28 -1.64 -64.18 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.27 Total: 16.89 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 2.81 Total: -14.72 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -6.75 Total: -112.52 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.53 -1.64 -64.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259656241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.447 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds