Wall clock time and date at job start Mon Mar 30 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 C 1.50695 * 109.47196 * 64.99596 * 3 2 1 14 14 N 1.28187 * 118.73706 * 25.00320 * 13 3 2 15 15 C 1.45834 * 123.90464 * 180.57718 * 14 13 3 16 16 C 1.53048 * 110.56155 * 339.56988 * 15 14 13 17 17 C 1.53639 * 108.36409 * 49.06732 * 16 15 14 18 18 N 1.36956 * 118.73958 * 204.72968 * 13 3 2 19 19 C 1.46504 * 120.61328 * 347.38349 * 18 13 3 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.25556 * 99.85110 * 15 14 13 27 27 H 1.09000 * 109.26030 * 219.32901 * 15 14 13 28 28 H 1.09005 * 109.68381 * 168.78159 * 16 15 14 29 29 H 1.08994 * 109.69006 * 289.34303 * 16 15 14 30 30 H 1.08992 * 109.88604 * 60.37006 * 17 16 15 31 31 H 1.08999 * 109.88371 * 181.38575 * 17 16 15 32 32 H 1.09000 * 109.47196 * 90.00241 * 19 18 13 33 33 H 1.09007 * 109.46738 * 209.99518 * 19 18 13 34 34 H 1.09000 * 109.47432 * 329.99575 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 6 1.6413 2.1163 1.2876 14 7 1.4287 1.3908 2.3228 15 6 1.0268 1.9221 3.6200 16 6 1.3792 3.4078 3.7249 17 6 0.8676 4.1169 2.4616 18 7 1.5254 3.4808 1.3084 19 6 2.0418 4.2904 0.2019 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.8293 -0.0604 -2.9502 26 1 -0.0493 1.7983 3.7415 27 1 1.5429 1.3743 4.4085 28 1 0.9017 3.8371 4.6058 29 1 2.4603 3.5245 3.7992 30 1 -0.2137 4.0037 2.3850 31 1 1.1277 5.1748 2.4993 32 1 1.2614 4.4213 -0.5476 33 1 2.3510 5.2655 0.5786 34 1 2.8973 3.7869 -0.2483 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259667587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:52 Heat of formation + Delta-G solvation = 13.942023 kcal Electronic energy + Delta-G solvation = -14721.449691 eV Core-core repulsion = 12461.052816 eV Total energy + Delta-G solvation = -2260.396876 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.83820 -34.82828 -33.19610 -31.88690 -30.38967 -27.28791 -26.76960 -23.64123 -23.41926 -21.95804 -19.86050 -17.14798 -16.26305 -15.78406 -15.11491 -14.58888 -14.30413 -13.57131 -13.10131 -12.93648 -12.59417 -12.13659 -11.83208 -11.70359 -11.54888 -11.18753 -11.05182 -10.91915 -10.76251 -10.41089 -9.92284 -9.70887 -9.56320 -9.19199 -8.69698 -8.31793 -8.04073 -7.03119 -6.00250 -4.06610 3.29815 3.38306 3.41957 3.68681 3.89855 4.45252 5.17229 5.26430 5.29378 5.36854 5.68516 5.77944 5.91784 5.95047 6.04494 6.22074 6.34803 6.45713 6.52803 6.56913 6.62293 6.75044 6.80411 7.20557 7.32526 7.48313 7.65743 7.80266 8.02273 8.11068 8.35613 8.44243 8.93703 9.53454 9.56563 11.04486 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.011491 C = 0.010117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.299156 B = 2436.047513 C = 2766.895532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C 0.095 3.905 4 H 0.040 0.960 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.065 3.935 8 N -0.884 5.884 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.439 3.561 14 N -0.623 5.623 15 C 0.065 3.935 16 C -0.167 4.167 17 C 0.120 3.880 18 N -0.653 5.653 19 C 0.094 3.906 20 H 0.030 0.970 21 H 0.033 0.967 22 H 0.040 0.960 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.261 0.739 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 6.329 5.402 9.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.058 0.942 5 C -0.541 4.541 6 H 0.073 0.927 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.721 3.279 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.165 3.835 14 N -0.349 5.349 15 C -0.065 4.065 16 C -0.207 4.207 17 C -0.004 4.004 18 N -0.377 5.377 19 C -0.050 4.050 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.900 5.508 5.541 8.732 hybrid contribution 0.850 1.016 0.141 1.332 sum -3.049 6.524 5.681 9.173 Atomic orbital electron populations 1.21804 0.99658 0.98934 0.99549 1.21368 0.91400 0.98431 1.02677 1.17982 0.96057 0.92690 0.85829 0.94174 1.20914 0.90133 1.37958 1.05061 0.92689 1.24905 0.98014 0.95089 0.95660 1.69901 1.34696 1.38270 1.09412 0.86523 0.85760 0.77827 0.77830 1.19882 1.20950 1.21059 1.23192 0.85620 0.79051 0.95673 1.71112 1.30433 1.34931 0.98455 1.21655 0.98870 0.91488 0.94472 1.22424 1.01678 0.99146 0.97439 1.21532 0.96081 0.96537 0.86246 1.47397 1.63457 1.05768 1.21047 1.21691 1.00072 0.94300 0.88951 0.95120 0.94777 0.94073 0.93039 0.89260 0.92917 0.93180 0.91457 0.91701 0.91646 0.93173 0.91270 0.94501 0.93528 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.69 37.16 0.36 -2.72 16 2 C -0.10 -2.49 4.89 -26.73 -0.13 -2.62 16 3 C 0.09 2.36 1.32 -92.92 -0.12 2.24 16 4 H 0.04 1.06 7.46 -51.93 -0.39 0.67 16 5 C -0.50 -13.40 7.03 -34.44 -0.24 -13.64 16 6 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.37 11.29 55.43 0.63 -23.74 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.44 9.94 5.67 -155.52 -0.88 9.06 16 14 N -0.62 -14.05 8.37 -58.64 -0.49 -14.54 16 15 C 0.07 1.20 7.20 -4.38 -0.03 1.17 16 16 C -0.17 -2.63 6.26 -26.37 -0.17 -2.79 16 17 C 0.12 1.91 6.67 -3.32 -0.02 1.88 16 18 N -0.65 -12.75 3.23 -178.27 -0.58 -13.32 16 19 C 0.09 1.66 9.82 59.85 0.59 2.25 16 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.89 6.77 -51.93 -0.35 0.53 16 23 H 0.05 1.33 7.54 -51.93 -0.39 0.94 16 24 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 25 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.92 7.87 -51.93 -0.41 0.52 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 34 H 0.10 1.96 5.97 -51.93 -0.31 1.65 16 LS Contribution 268.23 15.07 4.04 4.04 Total: -1.00 -28.41 268.23 -7.65 -36.06 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.49 Total: -0.85 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.74 Total: -3.53 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.44 Total: -51.61 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.41 -7.65 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.004 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds