Wall clock time and date at job start Mon Mar 30 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 C 1.50695 * 109.47196 * 64.99596 * 3 2 1 14 14 N 1.28187 * 118.73706 * 25.00320 * 13 3 2 15 15 C 1.45834 * 123.90464 * 180.57718 * 14 13 3 16 16 C 1.53048 * 110.56155 * 339.56988 * 15 14 13 17 17 C 1.53639 * 108.36409 * 49.06732 * 16 15 14 18 18 N 1.36956 * 118.73958 * 204.72968 * 13 3 2 19 19 C 1.46504 * 120.61328 * 347.38349 * 18 13 3 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.25556 * 99.85110 * 15 14 13 27 27 H 1.09000 * 109.26030 * 219.32901 * 15 14 13 28 28 H 1.09005 * 109.68381 * 168.78159 * 16 15 14 29 29 H 1.08994 * 109.69006 * 289.34303 * 16 15 14 30 30 H 1.08992 * 109.88604 * 60.37006 * 17 16 15 31 31 H 1.08999 * 109.88371 * 181.38575 * 17 16 15 32 32 H 1.09000 * 109.47196 * 90.00241 * 19 18 13 33 33 H 1.09007 * 109.46738 * 209.99518 * 19 18 13 34 34 H 1.09000 * 109.47432 * 329.99575 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 6 1.6413 2.1163 1.2876 14 7 1.4287 1.3908 2.3228 15 6 1.0268 1.9221 3.6200 16 6 1.3792 3.4078 3.7249 17 6 0.8676 4.1169 2.4616 18 7 1.5254 3.4808 1.3084 19 6 2.0418 4.2904 0.2019 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.8293 -0.0604 -2.9502 26 1 -0.0493 1.7983 3.7415 27 1 1.5429 1.3743 4.4085 28 1 0.9017 3.8371 4.6058 29 1 2.4603 3.5245 3.7992 30 1 -0.2137 4.0037 2.3850 31 1 1.1277 5.1748 2.4993 32 1 1.2614 4.4213 -0.5476 33 1 2.3510 5.2655 0.5786 34 1 2.8973 3.7869 -0.2483 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259667587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:52 Heat of formation + Delta-G solvation = -2.913785 kcal Electronic energy + Delta-G solvation = -14722.180614 eV Core-core repulsion = 12461.052816 eV Total energy + Delta-G solvation = -2261.127798 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38035 -36.64883 -34.69096 -33.79645 -32.02963 -29.19749 -28.17991 -25.43214 -24.96952 -23.57667 -21.60507 -18.84005 -18.14873 -17.47898 -16.62289 -16.29709 -15.87249 -14.97455 -14.85981 -14.69652 -14.09713 -13.71373 -13.45456 -13.29279 -13.10621 -12.96498 -12.75251 -12.58427 -12.47816 -12.11110 -11.63324 -11.59633 -11.42050 -11.04707 -10.56746 -10.37400 -9.60386 -8.55489 -8.05682 -6.18259 1.42459 1.45663 1.55631 1.99700 2.45888 2.51566 3.20895 3.85598 3.93099 4.05368 4.34796 4.48325 4.63780 4.65613 4.68133 4.71921 4.79103 4.85707 4.89792 4.95309 5.10791 5.18321 5.24646 5.37513 5.39942 5.55095 5.72785 6.00022 6.03784 6.27496 6.39989 6.74315 6.85360 7.47389 7.91867 8.98369 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.011491 C = 0.010117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.299156 B = 2436.047513 C = 2766.895532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C 0.097 3.903 4 H 0.020 0.980 5 C -0.510 4.510 6 H 0.040 0.960 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.275 1.275 13 C 0.429 3.571 14 N -0.654 5.654 15 C 0.057 3.943 16 C -0.158 4.158 17 C 0.116 3.884 18 N -0.659 5.659 19 C 0.095 3.905 20 H 0.047 0.953 21 H 0.035 0.965 22 H 0.042 0.958 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.263 0.737 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 7.679 6.419 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.132 4.132 3 C 0.077 3.923 4 H 0.038 0.962 5 C -0.549 4.549 6 H 0.058 0.942 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.154 3.846 14 N -0.381 5.381 15 C -0.072 4.072 16 C -0.198 4.198 17 C -0.007 4.007 18 N -0.383 5.383 19 C -0.049 4.049 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.240 6.883 6.567 10.416 hybrid contribution 0.925 0.594 -0.135 1.107 sum -3.316 7.477 6.432 10.405 Atomic orbital electron populations 1.21641 0.97194 1.00113 0.99634 1.21199 0.93570 0.98137 1.00329 1.17771 0.94987 0.92667 0.86890 0.96217 1.21009 0.91256 1.37888 1.04740 0.94211 1.25562 1.01896 0.94790 0.95386 1.70002 1.36190 1.38746 1.09772 0.85607 0.81024 0.77681 0.77910 1.19936 1.20908 1.20030 1.22600 0.86577 0.80609 0.94817 1.70983 1.30460 1.36702 0.99979 1.21774 0.99577 0.93522 0.92358 1.22348 1.01035 0.97337 0.99077 1.21808 0.96252 0.97986 0.84613 1.47526 1.63345 1.04912 1.22498 1.21680 0.99026 0.95159 0.89005 0.93396 0.94538 0.93943 0.94869 0.91808 0.92776 0.91931 0.91225 0.87795 0.93174 0.92317 0.88050 0.93880 0.89982 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 9.69 71.98 0.70 -4.85 16 2 C -0.09 -4.76 4.89 30.60 0.15 -4.61 16 3 C 0.10 4.95 1.32 -12.28 -0.02 4.94 16 4 H 0.02 1.08 7.46 -2.39 -0.02 1.06 16 5 C -0.51 -27.89 7.03 25.60 0.18 -27.72 16 6 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -50.98 11.29 21.45 0.24 -50.74 16 9 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.43 19.39 5.67 138.16 0.78 20.18 16 14 N -0.65 -29.20 8.37 -339.43 -2.84 -32.04 16 15 C 0.06 1.99 7.20 86.52 0.62 2.61 16 16 C -0.16 -4.49 6.26 30.83 0.19 -4.30 16 17 C 0.12 3.30 6.67 86.46 0.58 3.88 16 18 N -0.66 -24.79 3.23 -717.92 -2.32 -27.11 16 19 C 0.10 3.26 9.82 127.77 1.25 4.51 16 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.04 1.80 6.77 -2.38 -0.02 1.78 16 23 H 0.03 1.76 7.54 -2.39 -0.02 1.74 16 24 H 0.06 3.55 5.95 -2.39 -0.01 3.53 16 25 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 2.24 7.87 -2.39 -0.02 2.23 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 2.18 7.91 -2.38 -0.02 2.16 16 34 H 0.06 2.59 5.97 -2.39 -0.01 2.58 16 Total: -1.00 -61.52 268.23 3.05 -58.47 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.05 Total: 9.72 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 4.89 Total: -3.65 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -4.92 Total: -109.89 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -61.52 3.05 -58.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.559 kcal (2) G-P(sol) polarization free energy of solvation -61.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds