Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46940 * 2 1 4 4 H 1.09001 * 109.47362 * 306.57586 * 3 2 1 5 5 C 1.50692 * 109.47450 * 66.57859 * 3 2 1 6 6 H 1.08004 * 120.00413 * 84.78224 * 5 3 2 7 7 C 1.37880 * 119.99926 * 264.78294 * 5 3 2 8 8 N 1.31513 * 119.99689 * 171.53837 * 7 5 3 9 9 Si 1.86797 * 119.99985 * 351.54399 * 7 5 3 10 10 H 1.48502 * 109.47263 * 87.55542 * 9 7 5 11 11 H 1.48505 * 109.47040 * 207.55144 * 9 7 5 12 12 H 1.48495 * 109.46952 * 327.55460 * 9 7 5 13 13 C 1.50709 * 109.46989 * 186.57810 * 3 2 1 14 14 N 1.28177 * 118.73440 * 334.73162 * 13 3 2 15 15 C 1.45834 * 123.90418 * 180.36993 * 14 13 3 16 16 C 1.53046 * 110.62887 * 340.02209 * 15 14 13 17 17 C 1.53642 * 108.36024 * 48.87872 * 16 15 14 18 18 N 1.36959 * 118.73589 * 154.99666 * 13 3 2 19 19 C 1.46501 * 120.61903 * 347.35690 * 18 13 3 20 20 H 1.09004 * 109.47182 * 299.44833 * 1 2 3 21 21 H 1.09001 * 109.47512 * 59.45314 * 1 2 3 22 22 H 1.09004 * 109.46851 * 179.45268 * 1 2 3 23 23 H 1.08999 * 109.47183 * 239.99902 * 2 1 3 24 24 H 1.09001 * 109.47740 * 119.99825 * 2 1 3 25 25 H 0.97005 * 119.99889 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.37775 * 219.62631 * 15 14 13 27 27 H 1.09003 * 109.04369 * 100.20615 * 15 14 13 28 28 H 1.08996 * 109.68829 * 289.15900 * 16 15 14 29 29 H 1.08997 * 109.68559 * 168.58976 * 16 15 14 30 30 H 1.09000 * 109.88190 * 181.45999 * 17 16 15 31 31 H 1.08992 * 109.95098 * 60.40696 * 17 16 15 32 32 H 1.09006 * 109.47358 * 90.00012 * 19 18 13 33 33 H 1.09001 * 109.47077 * 209.99913 * 19 18 13 34 34 H 1.08996 * 109.47149 * 329.99892 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5837 1.9892 -0.8253 5 6 1.6749 2.1044 1.3037 6 1 2.3126 1.9849 2.1671 7 6 0.5269 2.8626 1.3942 8 7 0.1194 3.3016 2.5650 9 14 -0.4498 3.2662 -0.1462 10 1 -1.4245 2.1782 -0.4135 11 1 -1.1777 4.5456 0.0502 12 1 0.4764 3.3955 -1.2997 13 6 3.5382 1.4457 -0.1628 14 7 4.2005 0.4130 0.2085 15 6 5.6510 0.2981 0.1099 16 6 6.2035 1.3008 -0.9059 17 6 5.6026 2.6812 -0.5993 18 7 4.1402 2.5540 -0.6966 19 6 3.3427 3.5937 -1.3517 20 1 -0.3634 0.5053 0.8949 21 1 -0.3634 0.5223 -0.8850 22 1 -0.3633 -1.0277 -0.0098 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 -0.6881 3.8353 2.6287 26 1 5.9133 -0.7124 -0.2032 27 1 6.0907 0.4972 1.0873 28 1 5.9239 0.9942 -1.9138 29 1 7.2893 1.3465 -0.8233 30 1 5.9604 3.4108 -1.3258 31 1 5.8815 2.9930 0.4071 32 1 3.0431 4.3398 -0.6155 33 1 3.9371 4.0706 -2.1310 34 1 2.4545 3.1445 -1.7959 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259667588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = 20.075194 kcal Electronic energy + Delta-G solvation = -14768.502890 eV Core-core repulsion = 12508.371969 eV Total energy + Delta-G solvation = -2260.130921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.92135 -35.07281 -33.28717 -31.93421 -30.92382 -27.38206 -26.90944 -23.90608 -23.64680 -21.93101 -19.77652 -17.19197 -17.06717 -15.85998 -15.22408 -14.65972 -13.99186 -13.67155 -13.34916 -13.04779 -12.78105 -12.76546 -12.33518 -12.05246 -11.67947 -11.39900 -11.08782 -10.75224 -10.54085 -10.32109 -10.19766 -9.65729 -9.59108 -9.42499 -8.83534 -8.53171 -8.17852 -7.10847 -6.08709 -4.06268 3.24129 3.30263 3.35924 3.56724 3.81798 4.37557 5.10455 5.13002 5.24108 5.34831 5.57124 5.68955 5.85169 5.89274 5.97069 6.05314 6.13990 6.26610 6.32702 6.35855 6.40215 6.51928 6.77806 6.80643 6.91831 7.12526 7.32596 7.55673 7.62015 7.75158 8.16711 8.53354 8.98825 9.40414 9.52310 11.04236 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034832 B = 0.012331 C = 0.010987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.660782 B = 2270.100898 C = 2547.771715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C 0.050 3.950 4 H 0.051 0.949 5 C -0.490 4.490 6 H 0.074 0.926 7 C 0.077 3.923 8 N -0.896 5.896 9 Si 0.865 3.135 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.263 1.263 13 C 0.441 3.559 14 N -0.629 5.629 15 C 0.066 3.934 16 C -0.165 4.165 17 C 0.121 3.879 18 N -0.647 5.647 19 C 0.098 3.902 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.031 0.969 24 H 0.067 0.933 25 H 0.264 0.736 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -0.673 -8.780 11.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.129 4.129 3 C 0.030 3.970 4 H 0.069 0.931 5 C -0.529 4.529 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.534 5.534 9 Si 0.693 3.307 10 H -0.191 1.191 11 H -0.221 1.221 12 H -0.188 1.188 13 C 0.166 3.834 14 N -0.355 5.355 15 C -0.064 4.064 16 C -0.205 4.205 17 C -0.003 4.003 18 N -0.370 5.370 19 C -0.046 4.046 20 H 0.089 0.911 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.546 -1.294 -8.365 10.700 hybrid contribution 0.044 1.143 -0.995 1.516 sum 6.590 -0.151 -9.360 11.448 Atomic orbital electron populations 1.21946 0.97562 0.99581 1.01829 1.21382 0.93763 0.97340 1.00393 1.18618 0.84273 0.95454 0.98683 0.93144 1.20662 1.07995 1.29689 0.94576 0.90760 1.24987 0.96628 0.95306 0.95547 1.69905 1.23770 1.36545 1.23202 0.87249 0.80942 0.77968 0.84546 1.19139 1.22073 1.18809 1.22859 0.96220 0.80261 0.84019 1.71036 1.07047 1.24623 1.32841 1.21643 0.90251 0.97658 0.96863 1.22405 1.00113 0.97199 1.00794 1.21536 0.81354 0.96743 1.00688 1.47216 1.05065 1.22388 1.62352 1.21658 0.95544 0.91191 0.96218 0.91080 0.94581 0.94464 0.95046 0.91461 0.92608 0.91390 0.92882 0.91814 0.91424 0.91133 0.92718 0.92993 0.93110 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.17 37.15 0.30 -2.92 16 2 C -0.09 -2.01 4.70 -26.73 -0.13 -2.13 16 3 C 0.05 1.19 1.58 -92.92 -0.15 1.04 16 4 H 0.05 1.17 2.93 -51.93 -0.15 1.02 16 5 C -0.49 -13.44 8.30 -34.44 -0.29 -13.72 16 6 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.08 2.13 4.66 -17.82 -0.08 2.04 16 8 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 9 Si 0.86 20.28 24.44 -169.99 -4.15 16.12 16 10 H -0.27 -6.05 6.09 56.52 0.34 -5.71 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.26 -5.65 5.26 56.52 0.30 -5.36 16 13 C 0.44 9.81 6.43 -155.52 -1.00 8.82 16 14 N -0.63 -13.86 9.46 -58.64 -0.55 -14.41 16 15 C 0.07 1.18 7.20 -4.38 -0.03 1.15 16 16 C -0.17 -2.47 6.26 -26.37 -0.17 -2.63 16 17 C 0.12 1.92 6.67 -3.37 -0.02 1.90 16 18 N -0.65 -12.55 3.23 -178.35 -0.58 -13.13 16 19 C 0.10 1.72 10.17 59.85 0.61 2.33 16 20 H 0.07 1.68 6.13 -51.93 -0.32 1.36 16 21 H 0.04 0.73 6.30 -51.93 -0.33 0.40 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 1.59 7.98 -51.93 -0.41 1.18 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 34 H 0.07 1.26 5.13 -51.93 -0.27 1.00 16 LS Contribution 259.41 15.07 3.91 3.91 Total: -1.00 -29.85 259.41 -6.95 -36.80 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.40 Total: 0.69 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.95 Total: -4.13 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.36 Total: -53.38 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.15 Total: 16.12 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.85 -6.95 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.875 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds